RNA id: XM_043252347.1


Basic Information

Item Value
RNA id XM_043252347.1
length 3026
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC122354215
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1291107 ~ 1300799 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCACGTACATTATTATCTCTTACACGAGTAACCCTGACGTGAAAAGTCAGTCGACATCTACAGTATGTAATCCCCATATGTAAAATCACTATCTGGTCTTTTTACGCCGACTGTTGTCATGTCCCTCAGCAACTTTCTCTTTCGATATCTTCGGCTCGAGAGACCAGACGATCAGGTTGAATCTCAGAGCAGAGGTCGAGGCTAACACTTCACACAGCTCGCGCTTTTCGagtttCACCAATTTGTCAAGCGATACTGATCACCATATGGAGGATGCAAGTTCAAATGATCAAAAATTACCAGGACGCAGTGCTGAGGATCAAGACTCAGGATCATCTGCGGATGAACAGAAGCAAACGATTCAAACAAACACCTTACAGCCGGAGAAGGACATTTGTAGAAGTCTTGATAAAAGCAGAGCCCAGTCATCCTCAGAGCCAGAGGATACTGCTACATTTAATATCAACGCGGTCAATCCAGAACGATTTCAAGAGAAGTGGGGGCGAAAGCTAGAGAAAGCCCTTCAGAGCTGGTTCGCCAAACCGgaaaatgaggggaaaaaacaacgagaaaagcaaagacaaaataaCGTATCGGTCCTCAGCCTTGAACTTACGAACGGTGGAACCAGTGCAAAGGTGAAATTAACACCATCAGCAGCTctagaaacactgaaaaaatgcaAGACTGTgtctttaaacattaaaactgaaaacaaggACGTGACCGTAAAGATTTGTCTGGATGAAACGCATCCTGCGACCGTATCACGAAACACCTCCGAGACAGACGAGATCAGAAATTCATCATCAAAGGCAAGGAGCACTCAAGCTAAGACTTCAGATGACACAAGTAATGGTGCATACGCTGCTGCATCTAATAGAGATCCAAGTGAGACCTCGTCTAGACTTTCTGTTCCTGTCCAATACTTCTGGTACATGCTTCACGTGTACAGAAAGGATCTGGAGCTAATTGAGAAACAACATGGAGTCTCTCTACTTTCAGAAGTGTCAGTCTTATTCAAACCCACCCAGGGTTCAAGCCCTGATTCTGTGTCTAAAGCCTCTGAAGACTTTCAGAATCTTCTCTATGAATGCGTGGAGAGTTGTAGTTATGCTGACATTAATCATAATGACATGGATTCAGATGTTGTGAAGGAGACCTTTCATAACGTCCAGTCAGAGAAGACAAAGATGATGTTCACCATGTCTGCCCGTGACTGTCAGTTCTTTGGACCGAAGGAGTTTATGGATAGGATTACAAAAGACTCGACAAGAGCAGAAAAACAATTTAAGATCAAACCACTTGAAATGGATGTAGATAGAAACATTTCTCCACGAAGAAGATATTCACTGGACATGGACACAAAAGACCTTCAGACTGAGCTTGAAATGGACAAGGTTTATTGGGATCTAATGAAACTTTCATATAAGGAACAATTATCACAGCTTGAAACAAAGTATGGAGTGTTGTTTCATGAAGTCAATctgcagaaaaatgtaattaaggtTCAGGCTCGATCCGAAGGAGTTCAGCACATTAATCTTGAAAGCCATGCCATGAGAGCTTTAACAAATCTTTACCAGAAACTAGCCTCAGCCGCGGTCAGCTGTGAACTCACAAAACCAACACAGAAAACTGATGTGGCTTCAATAGTAGAGGaacttcagcagcagcagcactgtGTTGTTGCAGCAGATGCATTCAGTTCCTGGAAGCTCGTTGGACTGCCTGAACATCTCGGTCCTGCTATTACTGACATTGAGAACAAACTGAAGAAGCATGTGTTTGATGACAAGATGAAGAAACTGATTGGTTACTCAGAAGACGTTCCTCACGCGAGAGGAATCAGCTGGACTCAGATGCTCGATCTTAGTCCTGGAGCAGGACGGGACGAGCGAGAGAACTTTAGAGGACGGGATGATAGTGATTTCAATAAAGAAGTAGAAGAAGATTCTAGACGTGATGGTAAAGGTGCTCAGGCTGAAGAGGAGATGTGCGCTATTTGTAGGGACGACTTCACTGACAAGACAAAACTCAAATGTGGGCACGAATTCTGTCAGGAATGTATAGATTTGTCAGTGAAGAGCCTGGGACCCATCTGTCCTGTGTGTAAAGAAGTGTTTGGGAGATTGGAGGGAAACCAACCGAATGgaaaaatgactgtaatgagGAGCATGTTGAGTCTCCCTGGATATTCACACTGTGGCACCATCGAAATACACTACAACATACCCAGTGGCATTCAAACGcaaaACCATCCAAACCCAGGAAAAAATTTTCATGGTGCAACCCGTCTTGCGTACTTGCCTGACAATCTTGAAGGAAATGAAGTGCTTGCACTGCTGCAGAGGGCTTTTAACCAGAAACTGATCTTTACTGTCGGGACCTCGACAACTTCTGGTGTACAGAATGCTGTGACCTGGAATGATATTCATCATAAGACCAGCAGATCCGGCGGCTCTCTAAACTATGGTTATCCAGACCCTGGCTACCTGAAGAGAGTGAAGGACGAGTTGAAGGCCAAAGGCATTGAATGAggattttattgatattttctcAAATGCACTTCTAAGCctgtatttacaaataattggctaaaattttgttatatatatcgTATATATAGTGATTTTCAGAAGTATTGAGACACAAGctaactgaaaaacaaactattGAACCTTCTGTGTGAAGCAAATTTCACGAAtctcaaaattaattatttcaaagaGACATtggttttaagaaaataaaaaaaatgaatgtaactCATGTTCTGTACTATTTAGGGATGCAGGGACTTGCTTCGTTTCCTTATTAATCAGCCGTTCGAACGAATCaattgagtgaatgattcagtgataaAATCAGTACTTACTGCCAccagttttagtttcattttttcatttcagttatttgaatcattgaatatttctatattaaagttgtatatttatgaattttatgTAATTCTATTCATGCCACCtcagattaaataaattgtCTGTAAATACCTACAAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116026 lncRNA upstream 13982 1276515 ~ 1277127 (+) True G78400
TU115991 lncRNA upstream 68274 1217224 ~ 1222835 (+) True G78380
TU115972 lncRNA upstream 95646 1195224 ~ 1195463 (+) True G78370
XR_006252047.1 lncRNA upstream 216529 1071074 ~ 1074580 (+) True LOC122353680
TU115811 lncRNA upstream 250899 1034532 ~ 1040210 (+) False tsen2
TU116101 lncRNA downstream 119545 1420344 ~ 1421787 (+) False rbms2a
TU116102 lncRNA downstream 121934 1422733 ~ 1425764 (+) True G78455
TU116118 lncRNA downstream 168869 1469668 ~ 1471384 (+) True G78467
TU116121 lncRNA downstream 178375 1479174 ~ 1482149 (+) True G78468
TU116134 lncRNA downstream 213080 1513879 ~ 1514178 (+) True G78479
XM_043251955.1 mRNA upstream 905 1285110 ~ 1290204 (+) True dtx3l2.2
XM_043251956.1 mRNA upstream 6156 1277780 ~ 1284953 (+) False mybl2b
XM_043251957.1 mRNA upstream 6156 1278024 ~ 1284953 (+) True mybl2b
XM_043251958.1 mRNA upstream 15096 1270083 ~ 1276013 (+) True ift52
XM_043251561.1 mRNA upstream 21513 1264285 ~ 1269596 (+) True srsf6b
XM_043251829.1 mRNA downstream 7874 1308673 ~ 1414799 (+) True lrp1aa
XM_043251428.1 mRNA downstream 118721 1419520 ~ 1448960 (+) False rbms2a
XM_043251430.1 mRNA downstream 119622 1420421 ~ 1448960 (+) True rbms2a
XM_043251429.1 mRNA downstream 135364 1436163 ~ 1448960 (+) False rbms2a
XM_043252016.1 mRNA downstream 184966 1485765 ~ 1517963 (+) True rargb
TU115960 other upstream 99388 1186866 ~ 1191721 (+) True LOC122353696
TU115925 other upstream 213710 1074744 ~ 1077399 (+) False cnbpb
TU115926 other upstream 213710 1074744 ~ 1077399 (+) False cnbpb
XR_006252083.1 other upstream 584559 603138 ~ 706550 (+) False atp2b2
TU115544 other upstream 695781 591328 ~ 595328 (+) False iars1
TU116128 other downstream 184908 1485707 ~ 1510874 (+) False rargb
TU116164 other downstream 289945 1590744 ~ 1593125 (+) True G78500
TU116178 other downstream 343832 1644631 ~ 1726097 (+) True G78506
TU116166 other downstream 377438 1678237 ~ 1680177 (+) False nabp2
unassigned_transcript_1592 other downstream 559498 1860297 ~ 1860368 (+) True trnaq-uug_15

Expression Profile