RNA id: XM_043252414.1


Basic Information

Item Value
RNA id XM_043252414.1
length 1949
RNA type mRNA
GC content 0.46
exon number 6
gene id cnpy2
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1697584 ~ 1700458 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGTGTGTAGATTAAACTTTCTGTAGAGCCCAATCATATGAAATTTCatatgaaaaaagcaaaaatcaaacCATGCtcccttttttaaaatacaaatataaatggaatatcatttcatttcatttccatGTGTTTTACGCAATCCTTTCtgccatcaaaatgattttgagTGCCGTGAGAGTAGGCTATAATTAAACGATTCATGTTTTCAGGGACAGCTTATTTACGTTTACGGACGTGACGTAATGACGCACCGCCATGTTCGAATTTCCCGCGAAAACCTACCGCTCAGATTagattaacattattaattaacattattaattagcTAAAGGCTATGCAGTTGCTCAAATGTTGATTCTGGATCAATTCGAACGAAAAAAAAGCAGGTTTAAGCTATTAGTTATCGTGTCTCTTATTCGTGCGGCTTTTAGACTCGGTGTGTTCTGGTAGCTCGTGCTGCACCGCCCCCTACTGGACGCGCCGGGAACGACGGGGCTGTGGAGCTTCATCGAGGTTTAGTAAAAGGGGGCGCGCGTGCATTTCGCGTCGCCGCTGCACGCGCTCCAGCTCGGCTGGCGGCGGTAACGCGTCGAAGACCGCGAACGCAAGTCGAGAAGAAAAACGAGCATCGCCGCAGATCTCAGGTCAGCGCGTGAGCTGCGATTTCCCCAGTGTGCACGTCATCAGTTGGAGAGCGCGCGCGAGCGGTGCATTCAAAGCAAAAGgtgGGGATGGAAAAACATTCTTACGTTGTTCTCGTTTGTGCATTGGTGTCTTTGCACCTACTGTTAAACGTCCAAGGAGCCAGACAGGGTCAAGACATAAAATGTGGAGcATGCAGGGCTTTAGTTGATGAAATGGAATGGGCCATCTCGCAGATAGATCCCAAGAAAATGATCCAGACCGGATCCTTTAGGATTAATCCCGATGGCAGTCAGTCAGTAAGAGAGGTTCCCTTTTCCCGCTCCGAGAGTCATCTCCTGGAACTAATGGAGGAGGTCTGTGAGAAGATGAACGACTACGGCGAGCGGGTCGACCCAGCGACCAACCGGAAGACGTACGTGAGGCATACGTCCCGTGACGGCACTGCCGCGGACCTCTCCGACGTGGCCTTCGACTCCAGAGTCACCTCCACTTTAAAGTTTGCTTGCGAAACCATCGTCGAGCAGAACGAGGACGAGCTGATCGAGTTCTTCGCTCACGAGACGGACAACGTTAAAGACAAGCTCTGCAGTAAGAGGACAGATCTCTGCGACCATGCCCTGAAGATACCTCACGACGAGTTATAACACGAGCCGAGCACATCATGACAGCTTTACGGCCGGAAAACCCCGCGTTCATCTGTTCATCTTCAGTAGACGGACTGCTTCTCTCGATTGTCGAGGACGCTGAACATACAGAGACCTGCTCCAGTGATGTTAGGAAAAGCATTACATATGTACTTGACCCTATGGGTTAACTGTTGACGTGTTCAACCCGCTACCATCAAAACTGTGCTTTGGCAATAATTAAAGCTGACTTTCTACAGCGGAAAACGAGATCCTTACGATTCTCTCCAGTGgcatacttttatatttaaatgtcctCGGATGCACTTAGTTTTTAGTTGAGAAGATGACATgcagtgtatttattataagcaCAGATAGAGCGCTTCTGGTGAAGCTGTGTCCTGATGTTTTGGGCTTTTTTTCAGGTCATGAATATGATCGGGTTACTAGTCCTTGAATCTTAACCAATTAGGTTAACACCGTTTTGTATGGAAGTGAGCGTCGGTCAACCCACTTTAAAGCATTCGTTTGTTTTCTTCGCACGCATTATTGCATTAGTATTGCTTTCAGGTTTTCAGcctatgtttgtgtttatgaaTCCATTGGGGACCATGTTGTgtttgtagttgtttttgtaatacactttaataataaaagcccTTTCTTTTAGTGCTA

Function

GO: NA

KEGG:

id description
K22936 CNPY1_2; protein canopy 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116306 lncRNA downstream 16424 1588704 ~ 1681160 (-) False LOC122354408
TU116313 lncRNA downstream 16424 1593234 ~ 1681160 (-) False LOC122354408
TU116271 lncRNA downstream 183681 1512836 ~ 1513903 (-) True G78574
TU116270 lncRNA downstream 185352 1512005 ~ 1512232 (-) True G78573
TU116269 lncRNA downstream 186058 1510981 ~ 1511526 (-) True G78572
XR_006252086.1 lncRNA upstream 39242 1739700 ~ 1741018 (-) True LOC122354127
TU116534 lncRNA upstream 223247 1923705 ~ 1924282 (-) True G78726
TU116575 lncRNA upstream 783212 2483670 ~ 2484844 (-) False LOC122354525
XR_006252118.1 lncRNA upstream 783237 2483695 ~ 2484928 (-) True LOC122354525
TU116576 lncRNA upstream 787026 2487484 ~ 2487836 (-) True G78756
XM_043252581.1 mRNA downstream 797 1680230 ~ 1696787 (-) True LOC122354408
XM_043252577.1 mRNA downstream 19389 1665623 ~ 1678195 (-) False dgkab
XM_043252576.1 mRNA downstream 19390 1664979 ~ 1678194 (-) False dgkab
XM_043252578.1 mRNA downstream 19394 1668635 ~ 1678190 (-) False dgkab
XM_043252570.1 mRNA downstream 19711 1664162 ~ 1677873 (-) False dgkab
XM_043252411.1 mRNA upstream 4166 1704624 ~ 1716129 (-) False nab2
XM_043252410.1 mRNA upstream 4166 1704624 ~ 1716127 (-) False nab2
XM_043252160.1 mRNA upstream 24812 1725270 ~ 1729839 (-) False inpp1
XM_043252161.1 mRNA upstream 24812 1725270 ~ 1729834 (-) True inpp1
XM_043251374.1 mRNA upstream 62117 1762575 ~ 1766074 (-) True LOC122353575
TU116011 other downstream 475118 1217451 ~ 1222466 (-) False phactr3b
unassigned_transcript_1591 other downstream 533243 1164270 ~ 1164341 (-) True trnac-gca_119
unassigned_transcript_1590 other downstream 533930 1163583 ~ 1163654 (-) True trnac-gca_118
unassigned_transcript_1589 other downstream 534150 1163363 ~ 1163434 (-) True trnac-gca_117
unassigned_transcript_1588 other downstream 534579 1162934 ~ 1163005 (-) True trnac-gca_116
XR_006252099.1 other upstream 4166 1704624 ~ 1716129 (-) True nab2
XR_006252142.1 other upstream 162229 1862687 ~ 1862826 (-) True LOC122354691
XR_006252152.1 other upstream 164549 1865007 ~ 1865147 (-) True LOC122354701
XR_006252144.1 other upstream 166812 1867270 ~ 1867409 (-) True LOC122354693
XR_006252143.1 other upstream 169089 1869547 ~ 1869684 (-) True LOC122354692

Expression Profile