RNA id: XM_043252417.1


Basic Information

Item Value
RNA id XM_043252417.1
length 1845
RNA type mRNA
GC content 0.46
exon number 18
gene id uba3
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 18075590 ~ 18082073 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtcGTTGCGCGTCAGGTGGATCGCGGCTTCGCCTTGTCATAAGGTTGCGCATTTTACTTCGAATGTTTATGACAATATGGCGGAAGGAGAGGAGCCGGAGAAGAAAAGAAGGAGAATAGAGGAGCTGAATGAGAATATGGTTGTGGATGGAGGGAGCGGGGATCGCTCTGACTGGCAGGGAAGATGGGACCATGTCAATAAGTTCTTAGAGAGAGCAGGACCCTTCACTCATCCGGATTTTGAACCCAGCACTGAGTCTCTCCAGTTTTTACAGGAAACATGCAAAATTCTGGTTATTGGAGCTGGTGGACTTGGTTGTGAGCTGCTCAAAGATCTGGCCTTGTCCGGTTTTCGGCACATTCATGTTGTGGACATGGACACCATTGATGTTTCTAACCTTAACAGACAGTTCCTCTTCAGACCGAAGGATGTGGGACGACCAAAGGCAGAGGTCGCGGCAGACTTTGTAAACGGCAGGGTCCCAGGCTGCAATGTCGTCCCacattttcagaaaatcCAGGACTTCGATGAGTCGTTTTACAGGCAATTTCACATAGTAGTCTGTGGCCTGGACTCTGTTGTTGCCAGAAGATGGATGAATGGGATGCTGTTATCTCTGCTGATTTATGAAGATGGTGTCCTAGATCCCAGTTCCATTATTCCATTAATAGATGGAGGCACAGAGGGCTTCAAGGGCAATGCCCGAGTCATTCTTCCAGGCATGACAGCTTGCATCGATTGCACCCTTGAGCTCTACCCTCCACAGATAAACTTTCCGATGTGCACGATAGCCTCTATGCCACGGTTACCAGAACATTGTGTTGAATACGTCCGCATGCTGCTTTGGCCCAAAGAAAAGCCTTTCGGAGATGGGGTAGCCCTAGATGGAGACGACCCAACGCACATCCAGTGGGTGTACCAGAAATCTCTGGAAAGAGCAGCAGAGTTCAGCATCACTGGGGTGACTTACAGACTCACCCAGGGGGTCGTGAAGAGAATAATTCCTGCTGTGGCTTCTACAAACGCTGTTATTGCTGctGCTTGTGCCACTGAGGTTTTTAAAATTGCCACAAGCGCCTATGTTCCCCTGAACAACTATTTGGTTTTCAATGATGTGGATGGGCTGTACACGTACACCTTTGAGGCTGAGAGAAAGGAGAACTGTTCCGCCTGCAGCCAGATACCACAAGACCTGCAGTTCCCGCCTTCGGCTAAACTACAGGACATTCTGGACTACTTGACTGAGAACGCCTCTCTCCAAATGAAGTCTCCTGCCATCACGACAACCTTggatggaaaaaacaaaactctgtATTTACAGACCGTAACATCTATTGAAGAGAGAACGCGACCGAATCTAAACAAAACGCTGAAAGAGCTTGGACTAGTTGATGGACAGGAACTGGCAGTGGCTGATGTCACCACTCCTCAGACTGTACTCTTCAAGCTCAACTTCATCTCATAGGACAAACGCTTCGTTCTCTTAGACATTTGCAGGTGGTTATTGCAGTCGTCATCAAAATGAAGCAGCCTTGGAAATGTAGTTTATAAACTCAACATATCAGCATCAGAGACATCACGTGCTCGGCTGGAATCGCCGCAgtttgtatttagatttttcggTCAGCTCTGTCCATCAAAGACACTTACAggagactttttttcttttcatcgtCTTGCACTGCTATAGTCGTAAGAGTCATTTTGGtggatttcttttttatgcaaactgttcatctatttattttgttgttgtgcaTTCGCAGTATCTTGTTCAGTGTcttgtaggaaaaaaaaagtcgttttgaattaaaattagaaatcatgttttaaacAAGTGCTGAA

Function

GO:

id name namespace
GO:0045116 protein neddylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016881 acid-amino acid ligase activity molecular_function
GO:0008641 ubiquitin-like modifier activating enzyme activity molecular_function

KEGG:

id description
K10686 UBA3, UBE1C; NEDD8-activating enzyme E1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122465 lncRNA downstream 254699 17820295 ~ 17820891 (-) False LOC122354073
XR_006252085.1 lncRNA downstream 256131 17818902 ~ 17819459 (-) True LOC122354075
TU122464 lncRNA downstream 256166 17818916 ~ 17819424 (-) False LOC122354075
TU122427 lncRNA downstream 317165 17742916 ~ 17758425 (-) False LOC122353787
TU122388 lncRNA downstream 359023 17714859 ~ 17716567 (-) True LOC122354587
XR_006252060.1 lncRNA upstream 31278 18113348 ~ 18122237 (-) False LOC122353822
XR_006252059.1 lncRNA upstream 36695 18118765 ~ 18122237 (-) True LOC122353822
TU122603 lncRNA upstream 43918 18125988 ~ 18133130 (-) True G82753
TU122621 lncRNA upstream 53814 18135884 ~ 18137373 (-) False mustn1b
TU122680 lncRNA upstream 115759 18197829 ~ 18198369 (-) False fgd5a
XM_043252416.1 mRNA downstream 1053 18064928 ~ 18074537 (-) True tmf1
XM_043252901.1 mRNA downstream 11103 18052013 ~ 18064487 (-) False eogt
XM_043252900.1 mRNA downstream 12597 18052013 ~ 18062993 (-) True eogt
XM_043251597.1 mRNA downstream 27708 18008489 ~ 18047882 (-) False tafa4b
XM_043252070.1 mRNA downstream 254666 17820273 ~ 17820924 (-) False LOC122354073
XM_043252426.1 mRNA upstream 661 18082731 ~ 18085939 (-) True cishb
XM_043252425.1 mRNA upstream 661 18082731 ~ 18085929 (-) False cishb
XM_043252422.1 mRNA upstream 4705 18086775 ~ 18094763 (-) False twf2b
XM_043252421.1 mRNA upstream 4705 18086775 ~ 18094763 (-) False twf2b
XM_043252420.1 mRNA upstream 4705 18086775 ~ 18094761 (-) False twf2b
TU122586 other downstream 27467 18008365 ~ 18048123 (-) True tafa4b
TU122389 other downstream 359023 17714859 ~ 17716567 (-) False LOC122354587
XR_006252134.1 other downstream 439925 17634806 ~ 17635665 (-) False LOC122354622
XR_006252133.1 other downstream 439926 17635365 ~ 17635664 (-) False LOC122354622
TU122328 other downstream 498606 17573602 ~ 17576984 (-) True G82590
unassigned_transcript_1804 other upstream 488306 18570376 ~ 18570448 (-) True trnav-aac_24
unassigned_transcript_1806 other upstream 489081 18571151 ~ 18571223 (-) True trnav-aac_25
TU123313 other upstream 2085235 20167305 ~ 20171305 (-) True G83230
TU123804 other upstream 2747726 20829796 ~ 20839292 (-) True G83592
XR_006252084.1 other upstream 3146272 21228342 ~ 21349094 (-) False kaznb

Expression Profile