RNA id: XM_043252458.1


Basic Information

Item Value
RNA id XM_043252458.1
length 3194
RNA type mRNA
GC content 0.43
exon number 11
gene id zrsr2
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 14367171 ~ 14373481 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAAGGTGACGTAATCTTTGCGCGCGCTGGTGTGATCAGTGTGAAATGTGTTGCCTTTATTCGGCGGTTTGACGTTATTGCCTCCCGACGAAACATGTaaatagtgttttaaaatgacgaACAGTAACTGTTGCTCGCTTCAGACGGTCCCGCCGGAGCTGCAAGACTCTCAGAGTCGGTTGAACGAGTGTGAGAGTGCTTCTGTTGTGCTCAGTCAAAAACAACGACGAGCTATTCTGAAAcgagaaagaaggaaaagaaaacgTCAAGCTGTTGCTAAATTAAGAATAGCAGATCATTCACAAAATGAAGAGCACCAAACTGAAAATGAGGAAGAACAGATGGCTGATGAGCAGAGTGAGCGATTACACCAGGAATGGCTGGAGAGGGAGAGAATTGCACAGGAAGAATTCAGGCTGAAAAGGGAGAGAGAAGAGGtggcacaaaagaaaaaggaggaaGAAGAGAGGAGGATCAGAGAGGAATGGGAGGAGCagcaaaggaaagaaaaagaggagcaGGAGCAAAAGgagcagaagaagagagagagagagGAAGCCGTACAGAAAATGCTGGATCAAGCAGAGAGTCAGCTGGAAAATGGTGGTCCTTGGAAAAACCCTGATGCCCCAAAGGATTATGGAACAGAAAAGGACAAGGCAAACTGCCCCTTCTTCCTTAAAACGGGTGCTTGTAGGTTTGGAGACCGGTGCTCCCGAAAGCATGAACACCCAACATCCAGCACCACTCTGATGGTGAGGGGGATGTTTGTGACCTTCGGGATGGAGCAGAGCAGACGTGATGACTATGACACTGATGCCAGTCTTGAGTATAGCGAGGAGGAAATGCACCAGCAGTTCCTGGATTTCTATGAAGACGCTCTACCAGAGTTCAAGAACGCAGGGAGGGTGGTGGTGAGCTGCAACTTTGAACCGCACTTGAGAGGAAATGTTTACGTTCAGTACGACACAGAGGAGAAATGTAGAGAAGCTTTTCTGATGTTTAATGGCCGCTGGTATGCTGGAAGACAACTGCAATGTGAATTCTCCCCAGTAACAAGATGGAAGACAGCCATATGTGgaCTTTTTGACAGGCGGAAATGTCCAAAGGGAAAACACTGCAACTTTCTCCACGTGTTCAGAAACCCAGATAATGAATTCTGGGAGGCGGACCGTGATCTTCATATGTCCCCCGATCGTGGTGGAGGATTTTCTAGTCGCCATTTAAGCAGCAGAGATGGAGCGCGGTCCCAACGTGCAAATAGTCCTGAGCACATATCCCAGCGCAGAAGGACAGATCGAAGGAGCCACAGCCGTGAGCGGTACGCTTACAGGGGAAGACGGAGCAGAGAGAGGCGGGGTCACAGTAGAGAGAGGCAGAGTCGCAGCAGAGGGAGACACAGCCGAAATGGGGAAAAGCATAGCCGGAGCAGAAGCAGAGAGAAAAGGAAATCAGAACAATCGATGACAAGGAGATCAGTGTCTCAGAAAGACCAATCTAAAAGGAGGAGCCGATCCAATAGCAGAGAGCGCTTAAAGCAAGGTGAATGTACATCAGCAGACCCGAGAAGATGGACGTCAAAATCGAACAGTCCAGAACGGGTGTCCAAAAACAGATCTGCGAAACGGAGGAGGCACAGGACGGAAAGCCAAAGCCCGGAAAACTCTGACCAGATGGATACACATCACCACAAGCACTCTAAAAAgagcaagaagaagaaaaagggcaaaaagaaacacaaaagaaagaagagtAAATCACACAGCTCAAGCTCGGAGTCGGACGAGGAGCGTGACGAGATGCCGGCTAAATCAGAAGAACGTACAGCTTCATCCGCAGATGGAGTAGAGACCACAGATTTAGATGGCTGTCATCCAGAAGAGGAAATCCATTGTGCTCTTACGGATGCTACCACCGTCACACAGTCTGGAtagattatattaaaatgtgtttatgtggtctTAAAGCTgctgttgttattttagtttgcaTAAAATTTTGCTGATGAAAACTTCctgtatatttgtaattaaatctaCTCCTTTCTGAAAGTCTTGGTGAGGTTCCAACATGTCACGTGGGTAAGCGGATATCAGGGACGATCTTATTTAAAGTGATATAAGCAGGACATATTTAATTCTATATTGTAACGTTCATTAGAGTAAAACAGATTAccaacaaagaaaaatatttgatgGGCACGCGATTCTGTCCCTCAGACGTGGATTGGATGGATATGAATCTCATATTCAGTTCTCCCTCCATTGAATCCACATGGCAGTGGCATTTGACTCTAAAGGAGCAAAGCTTAAGCAGATGAGATGAATTGGAGAGGTCTTGCCTTCACGACCTGAGAGAATGTATTGTGTATCAAtgaagtttatttgcaaaaacataactTCTTAGTAGTTGTTTAACCTAGTCAAaattgaaggaatagttcaaccaaaaattttaattctgtcaacatttactcaagcctgtatgaatttatttgttctgaCCAACACAGAGGAAgacattttggggaaaaaaaggaagaaatactatggaagtcaatggtgacccaaaaacagcctggttacaaacgtCCTTCAAATTatctttgtgttcggcagaacaaataaaaacatacaggcTTGGAACTCCGTAAGGTTGAGCAAATgttgacagaattaaaattttgtggttaactattcctttaaaaataaccCAACAGCAGACTGATTGgtaatacacaataaaaaaaacagtttttatctgtttttgcaaattaactctttgtataatttattttaattgatttattaatcaaaaacgTCTGTGGAAATCCGTGttgtaaaacaaatttatttatgattGGATTCAATTATTCTGTCTGTTACCGAAATCAGAGGGTCCCTGTTAAAAGGatcgtttttttcttcttttttttatgcataaatgtatatattttgtgttggtGACCACAGTTTTCAGTCCCTCATAGTATGGGAAACAAACAATGTTAAAGTCAGTAGAGACCAGAAACTTTATTTACCAAGATTCTCCAAAATGTTTTCTATCTTCaccttcatttttgggtgaaccgtcctTTTAAGATACACTTCCGCACTTTCCATTCAACGACGAGTATGTgtactaaacatttttatcGGTAAAAGATCATTAAAGATTGGCACAACGCGCTGCAG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K24273 ZRSR; U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121121 lncRNA downstream 51473 14313769 ~ 14315698 (-) True G81841
TU121104 lncRNA downstream 62047 13887333 ~ 14305124 (-) False G81829
TU121060 lncRNA downstream 75662 13850335 ~ 14291509 (-) False G81799
XR_006252052.1 lncRNA downstream 188721 14177864 ~ 14178450 (-) True LOC122353702
TU121113 lncRNA downstream 237031 14122476 ~ 14130140 (-) True G81834
TU121132 lncRNA upstream 1229 14374710 ~ 14375944 (-) True G81846
TU121155 lncRNA upstream 69121 14442602 ~ 14443821 (-) False chrna4b
TU121178 lncRNA upstream 105029 14478510 ~ 14479111 (-) True G81873
TU121179 lncRNA upstream 105716 14479197 ~ 14479429 (-) True G81874
TU121180 lncRNA upstream 108679 14482160 ~ 14482579 (-) True G81875
XM_043252948.1 mRNA downstream 468006 13889911 ~ 13899165 (-) False LOC122354669
XM_043252947.1 mRNA downstream 468006 13889911 ~ 13899165 (-) True LOC122354669
XM_043252816.1 mRNA downstream 500777 13862231 ~ 13866394 (-) True ddx49
XM_043252817.1 mRNA downstream 504959 13859905 ~ 13862212 (-) True lsm4
XM_043251819.1 mRNA downstream 768268 13597389 ~ 13598903 (-) True LOC122353917
XM_043252080.1 mRNA upstream 8546 14382027 ~ 14391444 (-) False txlng
XM_043252081.1 mRNA upstream 8546 14382027 ~ 14391239 (-) True txlng
XM_043252082.1 mRNA upstream 8546 14382027 ~ 14391062 (-) False txlng
XM_043251518.1 mRNA upstream 69842 14443323 ~ 14451740 (-) False chrna4b
XM_043251912.1 mRNA upstream 114896 14488377 ~ 14511622 (-) False elovl1b
TU121063 other downstream 439691 13856300 ~ 13927480 (-) False G81799
TU121103 other downstream 479906 13885683 ~ 13887265 (-) True G81829
TU120846 other downstream 667213 13698099 ~ 13699958 (-) True G81650
TU120872 other downstream 757567 13606272 ~ 13609604 (-) True G81666
TU120873 other downstream 757567 13606497 ~ 13609604 (-) False G81666
XR_006252040.1 other upstream 69120 14442601 ~ 14451740 (-) True chrna4b
TU121170 other upstream 161237 14534718 ~ 14536392 (-) True G81866
TU121492 other upstream 831480 15204961 ~ 15214058 (-) True G82067
TU121487 other upstream 861007 15234488 ~ 15235056 (-) False LOC122354561
TU121711 other upstream 1027437 15400918 ~ 15401691 (-) True LOC122354564

Expression Profile