RNA id: XM_043252487.1


Basic Information

Item Value
RNA id XM_043252487.1
length 8012
RNA type mRNA
GC content 0.48
exon number 48
gene id abca7
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1889679 ~ 1913851 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCCCGCCCATCGTTGCGCTTCGTCGAAGTGATCTTGTAACACCGGTAGCGCTCGGGAAGACTGCGAACCGGCTACATTCATGAAGCAGCGGGAGTTTGGGAAAAAACTAAAGGTTTCCTCTGTTGCCATGGCTGTGTAGTTTTGTGCCATCCGTCATGGCCATTGGAACACAGCTCTACCTGCTGCTGTGGAAAAACTTCACATACCGCAGGAGAAACAAGGTCCAGCTTGTCGTCGAACTCCTGTGGCCGCtgttcctcttcctcatcctcatcgCTGTCCGACAATCGCACCCACCGTATAAACAGAGCCAATGTCATTTTCCCAACAAAGCCCTTCCTTCAGCAGGCACGCTGGCATGGGTTCAGGGCATCGTCTGCAATGTCAACAACCCCTGTTTTCATCACCCCACAGCAGGAGAAACACCCGGGCGAGTGAGCAACTTTGAAAACTCCATACTGTCTCGGCTTTTAGTGGATATCAGAACCGTCCTGACACTCAGTGGTAACCGGACAGTCCTCTCCAGCCTGCAGGACCTGTCACAGGCAATCCAGAGACTCGGGGAAAGACCAGACGCTTGGCCAAATCTACCCGTAAGAGAGTATCTCAGAGCCAACGAAAGCTTCTCCTCCTTCCTGCGGACGAACACCAGCGTCCCCTCGGCCTCTGTTGATCAGTTACTGAGGGCACGATTGAACCTTCAAGTGGTTGCATTATCAGGTGAAGGAATTCGTCTCTCAGACATCGTCTGTAATGGTTCCCTCTTGGGTCGTTACCTCACTGTCGACGAAAGAGATTCTTTTCCCGAACTGCAAAGGGAGCTGTGTGCTGTGCCTTCAGATGTTATGCAGAAGGCCGAGCAGATCTTCCTCTCACAGCTGGACTTCAGCAAGATCCTCACGAGAGACAGACTACGGGCAAATGCAGCTGATCTTCAACTCATCAGTCGCCTTGTTTCTTCTGTGTCTCGGGAACTAGCGTCAGTCATGGATGACGTCTCTTCTCTGTCCAGTTTCTCAGAGCTGAACTCGGAGATGAGGCTACTGACACCTGAAAACCGCTCAGCATTGCCCCGCGAGAGCTTTCGTGCCTTCTCCAGGATCATGTGCGGGCACCCAGAAGCTGGGGGAGAGAGAATCCCTTCCTTCAACTGGTATGAAGATCAGGACATCAAATCTTTCCTGGGCAGAAATGCATCGGAGGAGACAGACCTTGAAAAAGACAACAGCACTAcGCCGTTCTGTGAAAACCTGATTCAAAGTCTGGAGTCGAACCCTCTCTCGCGGATCGTGTGGCGAAGCATCAAACCGCTGTTCATCGGAAAGCTGCTCTACACACCAGACACACCAGTCACCCGTATGGTCATGTCAGAGGTCAACAAAACTTTTCAGGACTTCCAGATTCTGAATGACATGCAGGAGGCGTGGCAGGAAGTGGGTCCCAGAATTAAAACCTTCATGGAGAGCGGTGTAGAGATTCGGCTTCTGCAGGATCTCCTGAGAAGGCCTGAGGTGGCGGTAGTTGTGAATCTTCAACTTGAGCACACTTCTTGGACGGCCTCTCGCATTTCCCGGTTCCTCTCGACGCCTGACCCAGATACACCTCGTAGAGATGGCGCTCCACCCACCTGGCTGGATCTGTTTCAGGATTTAAACACCACCTTCAGCGCTCTCTCAGAACTCACTAAGTGCTTCTCTCTGAATAAACTGGAGGGTCTGGCCACGGAGGGTGAGATGGTCGAACGAGCCCTGGAGCTGCTGGAAGATCGGCAGTTTTGGGCCGGAATTGTCTTCCTCCTTCCAGAGCCTTCGTCATCCTCTCTGCCTCCCCATGTCAAGTACAAGATCCGCATGGACATAGACGATGTAACCCGCACGAACAAGATCAAAGACAAATTTTGGGATCCAGGCCCGGCTGCTGAACCGTTCAGTGACCTCCGTTATGTTTGGGGcggttttatttatgtacagGATTTAGTTGAGAGAGCGGTGACACGTTTGCTCACCGGTAAAGAGCCAAACACGGGCATATACGTGCAACAGATGCCCTACCCTTGCTTCGTTGATGACGTGTTTATACGCGTCCTGAATCGTTCTCTGCCTCTGTTTATGACACTGGCGTGGATCTATTCAGTGGCTATGATCATAAAGGGTGTTGTCTATGAGAAAGAGGCTCGTCTGAAGGAGACAATGCGTATCATGGGTCTAAGTTCTGGGATGCTGTGGCTCAGCTGGTTCATCAGCAGTTACCTGCCCTTCCTGTTCAGCGCTGGACTGCTTATCGCCGCCCTTAAGTGGGGTGACATCTTACCCTACAGTGACCCGgctgttgttttcttcttcctGGCTGCCTTTGCTACAGCCACCATCATGCTTTGCTTCCTCATCAGCACGTTCTTCTCACGAGCTAACCTGGCAGCAGCGTGTGGAGGACTCATTTACTTCACTCTTTACCTGCCGTATGTGCTGTGCGTGGCCTGGAGGGAACATCTGACCAGCACACACAGGATCCTAGCGAGCTTCCTGTCTCCAGTGGCCTTTGGTTTTGGCTGTGAGTATTTCTCTCAGTATGAAGAGCAGGGTGTGGGGATCCAGTGGTTCAACTTGAAATCAAGCCCCATGGAGGGAGACCACTACAACTTCACTATCTCCATCGTGATGCTGTATGCAGATGCCGTCATCTATGCGCTGGCTACTTGGTACATTGAAGCCGTTTTTCCAGGACAGTATGGGATCCCCAGGCCATGGTACTTTATCTTCCAGCTCAATTACTGGGGCGGGGTACCATTAGAGGTGGGCTTGCCTGTTCCTCCAGCACCTAGAGATGAACCCGATGATCGGATTGAAGCTGAACCGACAAACCTACTTTTGGGAGTTTCCATAAGGAACTTGGTGAAGATTTATAAAAAAGGGGCCAAGCTTGCCGTCAATCACCTTAACATGAAGTTCTACGAGGGACAAATTACATCTTTTCTGGGTCATAATGGAGCCGGCAAGACGACTACTATGTCCATTCTAACAGGACTGTTTCCTCCCACTGCTGGTACAATATATGTGAAAGGAATGGACATTCGCACAGATATGGACATGATCCGCAGGACTCTGGGAGTTTGTCCCCAGCACAATGTCCTCTTTGACATTCTGACGGTGGAGGAGCATGTATGGTTCTACGGTCGAATGAAGGGCATGAGCATGGGAGAGGTGAAGAAGGAGATAAACTCACTTCTTGAGGATGTGGGCTTACAACACAAACGACATGAGCAGACCAGAAACCTTTCAGGGGGCATGCAAAGGAAACTCTCTGTTGCAATCGCTTTCATAGGGGGGTCAAAGGTTGTGGTCTTGGATGAGCCCACAGCTGGTGTGGACCCCTACTCCCGCCGTGGGATTTGGGACCTTCTGCTCAAGTATCGTGAAGGCCGCACCATCATTCTGTCCACACATTACATGGATGAGGCTGATCTCCTCGGGGACCGCATTGCAATCATTTCCCAGGGGAAGCTGTGCTGCTGTGGAACGCCACTCTTTCTCAAGGCACGTCTTGGTACTGGATACTACCTTACGCTGGTCAAGAGAGAGATGCATAGTACGCCCAGCAGCACCAGCACCAAACTCCCTTTAACTGCAGTTTCCAAGGACAGCGATTCTTCAGTAAGTGATGACACAGGACTGGGCAGTGAAGAGAATGGATTTGATGTTGCAGCCCTAATGGCTCTTGCACAGCAGAACATCCCTGATGCTCAGCTGGTGGAGGACATCGGCAGAGAGGCGGTCATCAACGTGCCCCATTCTGCCTCTGAGGACGGCAGTCTCGCTCTCTTTTTGAACGAACTGGACAAACGACAGGGCGAGTTCGGTGTGGTCAGTTACGGACTGTCAGACACCACGTTAGAAGAGatatttttacgTGTGGCAGAGGAGACAGGTGTAGATGCAGAACCTGAGGAGCCAGCAGCATCTCCAGTCCACCAGGGGCCATCGTCTGATGACAGAGACACAgGACGAAAACAGCCAATCAGGAGagAGGCCCAGGAGACAGATCTGTTGAGTGGGGATGGTCAGGGTGGCAGTGCTCCCCTAACAGGCTGCTTCCTCACATGTCAGCAGCTTCGAGCGCTTTTCACCAAAAGACTGAAGTATGCCCTTCGCAGTCGCAGAGGCATTTTTGCTCAGATCGTTCTTCCTGCGGTGTTTGTCCTTATCGCTCTCCTCTTCAGTCTTATTGTCCCACCCTTTGGGAAATATCCACCTCTGGAGCTCCAGCCATGGATGTATGGAGAGCAGTTCACCTTCTTCAGCAATGATGCCCCGCAGGATCCAGCCATACAGAACCTCCTGGATGCCTTGTTGAATCCGCCTGGGTTTGGGACCAAATGTATGGAGCCGAGCGGAGACACTGACTGTTTACAGGAAGCTGAAACAAAGTTTGTTCGGCCACAGATTCCCTACAGCATGTGGCAGCTCCTTCATAAAGGCAACTGGACTGTAGAGAAGCCGTCCCCCGACTGTGAGTGTAGTACTGAGGATATCCGCAGGATGCTTCCGGACTGCCCCGAGGGAGCAGGGGGAATCCCTCCTCCCCAGATGAAATCAATGACAGGTGATTTCCTGCAAAATTTGACTGGTCGCAACATTTCTGACTACCTCATCAAAACATATCCCCAGATTCTGAAGAAAAGtTTGAAGACGAAAAAATGGGTAAATGAATTTAGATACGGCGGGTTCTCTCTTGGAGCTAAAAGCTCTCAGGCTGGGGATGAGTCATATTACTTAGAAGAGTCTGTTTTGGCGATTAGAAGACGCTACAACATTGCAGAGaatgGCTCTTTAGATCAGCTCCTTCACAGACTACCAGATATCCTTACGGGACTCACCAGCCAAAATAACGTGAAGGTCTGGTTTAATAATAAAGGATGGCATGCCATGGCGTCATTTGTGAATATCATGAACAATGCTCTTCTTCGTGCCAACCTGCCACCTGATATGGAAAGACGTAAATATGGAATGACAGCCTACAATCACCCACTCAACCTCACAAAGGAGCAGCTGACAGAGATGGCCTTGATGACCACCTCAGTGGACGTTCTGGTGTCCATTTGTGTTATTTTCGCCATGTCGTTTGTTCCTGCCAGCTTTGTCCTTTTCCTTATTGAAGAACGAGTCAGTAAATCAAAACACCTCCAGTTTGTCAGTGGAGTGAAGCCCATCCTGTACTGGACCACCAACTACGTATGGGACATGTTGAACTATACAGTACCAGCCACTATGGTGGTCCTCATCTTTATCAGCTTCCAGCAAGAGTCGTATGTATCTGAGAAGAATCTGCCTGCACTGGTGCTCCTACTCTTGTTGTATGGTTGGTCTATCACCCCACTCATGTACCCAGCCTCCTTCATCTTCTCCGTCCCTAGCACTGCCTACGTGGTCCTCACCTCCATCAACCTCTTCATCGGCATCAACGGCAGTGTCGCCACCTTTGTCCTGGAGCTCTTTATTGATGAGCATTTGAACGAGGTTAACAGGATCCTGAAGAAGGTCTTTCTGATCTTCCCTCACTTCTGTCTGGGTCGAGGTCTCATTGACATGGCCAAGAACCAGGCCATGGCAGACGCATTTCAGCGGCTGGGAACCAAACAGAATCTGGAGCCTTTATCTTGGGATTTTGTAGGGAAGAACCTGTTTGCCATGGCGATGGAAGGAATAGTGTTTTTCATCTTCACTGTTCTCCTGCAGTATAAATTCTTTGTTAATTTTAGGTACGTTGAATGTTTGAACATTGTGATATTCGGTACAGCTGTGTCATTTTTCCTAGTAATGAAATGTTTTCCCTTCAGCCGATGGTCTGGCTTTGTGCTGCCCCCCCTGGGCACGGAGGATGAGGATGTGGCGAGAGAGCGTGATCGTGTGAAGAGCGGTAGAGCTGTGGGAGACGTTCTCATCCTCAAAGACCTTAGCAAGGTATACCAGGCAGGCAGGAAGCCGGCAGTGAATCGGCTTTGCTTGGGCATTCCTCGTGGAGAGTGTTTTGGGCTTCTTGGAGTTAACGGGGCTGGGAAAACCTCAACCTTCCGCATGCTAACTGGAGACACCCGCGTCACTTATGGAGAAGCATTTCTTAGCAACCACAGtgttatTACAGAAATGGAGAAGGTTCATCAGCTGATGGGCTACTGTCCTCAGTTTGACGCCATCAGTGACTTGCTGACAGGACGAGAGCACCTACAGTTCTATGCTCGCCTCAGAGGAGTGCCAGAGGCCCATGTTGCAAAGGTGGCACAGTGGGGAGTGCAAAAGCTTGGTCTGAGCCAGTATGCTGAGCGAGAGGCTGGGGGTTACAGCGGAGGAAACAAGCGCAAACTCTCCACCGCCATTTCCCTCATTGGAGCTGCACCTGTCATCTTCTTGGATGAGCCAACAACTGGAATGGACCCAAAGGCCAAACGCTTCCTTTGGAACTGCATCCTAAGTGTGATCAAAGAGGGACGATCTGTTGTTCTCACCTCCCACAGtaTGGAAGAGTGTGAGGCTCTCTGCACCCGAATGGCCATCATGGTGAACGGCAGGTTCCAATGTCTGGGTTCAGTTCAGCACCTGAAGAACAGgtTTGGAGACGGTTACACAATAATCCTTCGTTTGTCCACCCCATCTACAGAACCATGTCCAGTGGACGCCTTCATCCAGAGCGCCTTCCCTGGCATCCAGCTGAAGGAGAGACATCAGAATGTTCTCCAGTACCAGCTGCCATCACAAGCCTGTTCACTCGCTTGTGTCTTTGAAGTTCTGTCAAACAGTTATGAGGAGCTGGGAATAGCTGACTATTCAGTGTCACAGACTACACTGGATCAAGTGTTTGTTAACTTTGCTAAAGAGCAGACAGATGATGATGACCTCAGGGAAGTCACGGTAAACGGTGGAGGATCCGTGGCGATTCGAGCCAGCAGACCTCAGCGGCCCACAGACCTCAAACTGGAGAAATCCAGCAGGTCTTCCACACCACACTCTTCTTCAGCTCTCTCTGCAGATCAAGCTAATCACTCAGTACACACTCCTGAGTCTGTACTTACTGgttcaaaaaccaaaaagagcAAATCAAACAGTCCGTCAGTCTCAAGACAGCAACAGCAGATCCGGATGGAACCTGTTGGCGAGGCAGCTAATGGATCTAACCCCCACGAGGACCAGACACCTGGGAAAAAAGACCCATCCACGTTGTTTATTGTCAGTACCAAAATGCAggaaagcaaaatgtaaaaagacaaagacatttttaactgaacagcaaatgaaaattttgGTGCCTTGTTCAATTgtagttttcaaaaatgaaatgcaattattttaaaaacaatcaacTAATCATTCAGATTGGCTCTCCTGGTTATTCCTCATTGATTGTATGGGAAGACCTTACTCTGAAACTTGAAGATAACGCATGGCATCATGTATGTGTTTTGGAAATCTTTCCCAGACCTCTTTAGTGCAtaaattatgcacattttcagTTGATGTCACTTTGTGCAACCCAAATTtggatataattttttttctgaataatagTACATTATaacaaacttctttttttctacATGTATGTCAAGGTCAACTGTGCAGTGCAGAGATAATATCAGACACAAAAAACTGccttcatgtatttttattatttcctgattttttttttttttttatggatttaggtttatttgtcttattatttgttttttcagatgCACTTTAGCTTAAGACAATTCTAATATTGTAGTCTGGATTATCTCTGCCTCTCTTCACTGCAATGATTGTTACAATGCTTGATATGtagctctttttttatgtagtatttattgtatgtaaataCTGGAAATATTATGTAGGAAGGTATGTGCATGATGCTGGATGTTAAAATGCtggaatatttatatttaaatatctatatatgtgttatacatatacatttatttatttatatatacatatacatatataaatatgtatcaATAAAAATCTAGGTACTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252086.1 lncRNA downstream 148661 1739700 ~ 1741018 (-) True LOC122354127
TU116306 lncRNA downstream 208519 1588704 ~ 1681160 (-) False LOC122354408
TU116313 lncRNA downstream 208519 1593234 ~ 1681160 (-) False LOC122354408
TU116271 lncRNA downstream 375776 1512836 ~ 1513903 (-) True G78574
TU116270 lncRNA downstream 377447 1512005 ~ 1512232 (-) True G78573
TU116534 lncRNA upstream 9854 1923705 ~ 1924282 (-) True G78726
TU116575 lncRNA upstream 569819 2483670 ~ 2484844 (-) False LOC122354525
XR_006252118.1 lncRNA upstream 569844 2483695 ~ 2484928 (-) True LOC122354525
TU116576 lncRNA upstream 573633 2487484 ~ 2487836 (-) True G78756
TU116591 lncRNA upstream 782558 2696409 ~ 2696697 (-) True G78769
XM_043252730.1 mRNA downstream 493 1883645 ~ 1889186 (-) True r3hdm4
XM_043251544.1 mRNA downstream 39388 1828407 ~ 1850291 (-) False gdf11
XM_043251543.1 mRNA downstream 39388 1828407 ~ 1850291 (-) True gdf11
XM_043252517.1 mRNA downstream 66931 1802745 ~ 1822748 (-) True timeless
XM_043251571.1 mRNA downstream 92014 1789752 ~ 1797665 (-) True pmela
XM_043252860.1 mRNA upstream 310 1914161 ~ 1920741 (-) True si:ch73-40i7.5
XM_043251409.1 mRNA upstream 6980 1920831 ~ 1923591 (-) False pex11g
XM_043251408.1 mRNA upstream 6980 1920831 ~ 1923591 (-) True pex11g
XM_043251307.1 mRNA upstream 12418 1926269 ~ 1936304 (-) True si:ch73-40i7.2
XM_043251306.1 mRNA upstream 12418 1926269 ~ 1936301 (-) False si:ch73-40i7.2
XR_006252158.1 other downstream 12264 1877275 ~ 1877415 (-) True LOC122354708
XR_006252157.1 other downstream 14890 1874649 ~ 1874789 (-) True LOC122354706
XR_006252159.1 other downstream 17374 1872166 ~ 1872305 (-) True LOC122354709
XR_006252143.1 other downstream 19995 1869547 ~ 1869684 (-) True LOC122354692
XR_006252144.1 other downstream 22270 1867270 ~ 1867409 (-) True LOC122354693
unassigned_transcript_1621 other upstream 787357 2701208 ~ 2701279 (-) True trnap-cgg_2
unassigned_transcript_1622 other upstream 787957 2701808 ~ 2701885 (-) True trnaf-gaa_2
unassigned_transcript_1623 other upstream 788945 2702796 ~ 2702867 (-) True trnap-ugg_6
unassigned_transcript_1624 other upstream 789544 2703395 ~ 2703472 (-) True trnaf-gaa_3
unassigned_transcript_1625 other upstream 789708 2703559 ~ 2703632 (-) True trnai-aau_3

Expression Profile