RNA id: XM_043252522.1


Basic Information

Item Value
RNA id XM_043252522.1
length 1641
RNA type mRNA
GC content 0.52
exon number 6
gene id opn6a
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11539678 ~ 11547713 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATTCATGACTCTTTCGACGCTCGGGAAGCCGCTATGTCTGCCCACAGCCCGCTTCAGGTGGCCAACATCCCCTGGAGGAACAACAACTTCAGCCTGATGAGCCGCGACCCGCCGCTGTCCGACCAGGGAGAGACCATCATCGGCGTCTACCTGCTCGTCCTGGGCTGGTTGTcgtggttcgggaacagcatcGTGATCTTCGTTCTGTTCAAGCAGAGATCTTCTCTCCAGCCCACAGACTACCTGACGCTCAACCTGGCCGTCTCTGACGCCAGCATCTCTGTGTTCGGATACTCCCGAGGAATCCTGGAGATCTTCAACATCTTCAGGGACAACGGATACCTCATCACCTCCGTCTGGACCTGCCAGgtggaCGGCTTCTTCACGCTGGTCTTTGGTCTGGGGAGCATCAACACTCTGACCGTCATCAGCATCAGCAGATACATCAAGGGCTGTCACCCTAATAAAGctCACTGCATCACTAACGCCACCGTGCTCAGCTCTGTGATCTTCATCTGGACAGGAGCCGTGTTCTGGTCCGGAGCCCCGATCCTCGGCTGGGGAAGCTACACGGACCGTGGATACGGCACCTGTGAGATCGACTGGGTCAAAGCCAACTACTCCACCATCCACAAATCCTACATCATCTCCATCCTCATCTTCTGCTTCTTCATCCCCGTCCTGATCATGCTCTTCTCGTACATCTCCATCATCAACACGGTGAAGAGAGGGAACGCCATGTCAGCCGAAGGAGACCTGACCGACCGGCAGCGCAAGATCGAGAGAGACGTCACCATCGTGTCTATCGTGATCTGCACAGCGTTCATCCTGGCCTGGTCTCCGTACGCCGTGGTGTCGATGTGGTCAGCCTGGGGTTTCCACGTCCCGAGCCTCACCAGCATCTTCACGCGGCTCTTCGCCAAATCCGCCAGCTTCTACAACCCCCTGATCTACTTCGGCCTGAGCTCCAAGTTCCGGCGGGACGTGAACGTGCTGCTGCCGTGCGGAGGAGAGGCCCGGGACGGCGTCAAGCTCAAGCGCTTCAAGAAGATCAAGGGCAGGGCGGACGGCCAGAGACTCCGAGCCGAGGAGAACCGAGACCTACAGAAGAACCAGAGGAAGTACGCCCCGGCCGACCCCGCCCCCAGCCCCGACTCAGGTGTGGGCAGTCACCTGGAGACTCCGCCCCCTGCGGCTCAGCAGGTGTTCTTCATCGACGCACCTGAACCTGAGTCCCAGTGCGACCGGCTCTAGATCTACACTGCTTTTTTCATTCACtgtgtacaaaataaaagtctttgtttatgTCATATATGACCCCGGAGCAGAGAAGCAGctgtatttataacaataacCAATAATACACTGCATGGCTCAAAATGACCCATTTTTCCTTTATGCCAAAAAATGAAGATACTTAGTCGATTTCCTACCATTAATATatcgattttctcaatatttaccTTTTATGATCATAGTCTGATCATAGCAAACCAGAAATACACAgagatgatttattcatttgatttcaatttaaaactATTGACCCTCATGCTCCAGGGACACATATATGTGTGGGTactgtgtataatttattattattattattattattattaaacatacagCATACAGTAGTG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119509 lncRNA upstream 27784 11511474 ~ 11511894 (+) True G80809
TU119508 lncRNA upstream 30625 11508000 ~ 11509053 (+) True G80808
TU119503 lncRNA upstream 67377 11471971 ~ 11472301 (+) True G80804
TU119287 lncRNA upstream 87540 11449049 ~ 11452138 (+) True G80668
XR_006252073.1 lncRNA upstream 92158 11443647 ~ 11447520 (+) False LOC122353945
TU119516 lncRNA downstream 1902 11549615 ~ 11555713 (+) True G80814
TU119526 lncRNA downstream 9249 11556962 ~ 11559047 (+) True G80819
TU119535 lncRNA downstream 23389 11571102 ~ 11571431 (+) True G80825
XR_006252094.1 lncRNA downstream 110173 11657886 ~ 11672957 (+) False LOC122354243
TU119594 lncRNA downstream 135211 11682924 ~ 11683244 (+) True G80860
XM_043252731.1 mRNA upstream 4564 11528719 ~ 11535114 (+) True eif4a3
XM_043251321.1 mRNA upstream 12745 11525023 ~ 11526933 (+) False rpl37a
XM_043252192.1 mRNA upstream 16020 11512333 ~ 11523658 (+) True LOC122354143
XM_043252195.1 mRNA upstream 31961 11505653 ~ 11507717 (+) False LOC122354145
XM_043252196.1 mRNA upstream 39756 11486516 ~ 11499922 (+) True orc2
XM_043251529.1 mRNA downstream 50077 11597790 ~ 11599698 (+) True map1lc3c
XM_043252117.1 mRNA downstream 150611 11698324 ~ 11700214 (+) True tomm20b
XM_043252113.1 mRNA downstream 158395 11706108 ~ 11715351 (+) True tbce
XM_043252115.1 mRNA downstream 158395 11706108 ~ 11715351 (+) False tbce
XM_043252114.1 mRNA downstream 158395 11706108 ~ 11715351 (+) False tbce
TU119513 other upstream 10042 11528734 ~ 11529636 (+) False eif4a3
TU119512 other upstream 12636 11525059 ~ 11527042 (+) True rpl37a
TU119266 other upstream 31907 11505682 ~ 11507771 (+) False LOC122354145
TU119267 other upstream 31907 11505682 ~ 11507771 (+) True LOC122354145
TU119444 other upstream 313056 11222347 ~ 11226622 (+) True G80761
TU119538 other downstream 32313 11580026 ~ 11672938 (+) False LOC122354243
TU119539 other downstream 32313 11580026 ~ 11660942 (+) True LOC122354243
TU119601 other downstream 150651 11698364 ~ 11700214 (+) False tomm20b
TU120019 other downstream 313229 11860942 ~ 11863112 (+) False LOC122353892
TU120138 other downstream 645041 12192754 ~ 12225492 (+) False G81213

Expression Profile