RNA id: XM_043252592.1


Basic Information

Item Value
RNA id XM_043252592.1
length 2166
RNA type mRNA
GC content 0.53
exon number 5
gene id gata2a
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3099718 ~ 3114020 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCGGTTTTCTGAGgagattttaaatctgttttttttttgttgttgttgttgggaaAATCACGCAGAGGcgaaagaaaatacattttaagcgtTCGCTTGCGGTTCGAACTGAAAGAGTGAACCATCTTCGGCGGTTTTGTGCGTTGCGTAACtgatatttaacttttatttgatCTCAATGTCAAGTTTGTACTGTTCGAGTACGGAGTTAACAGCTCGTCTCACGGGAAGTCAGGTCTGCCGACCACACCTCATACACAGTCCCGGTATTCCTTGGCTAGACAGCGGCAAGGCAGCGCTCTCCGCCGCCCACCACAACGCCTGGGCGGTCAGTCACTTCAGCAAGCCTGGCCTGCACCCCGCCAGCGCCGGTTACCCTTGCAGCAGCAGCTCCAGCACCGCTCCCGTCTCCTCCCTCACGTCCGCGACCCACTCCAGTCCACATCCCCTCTACAATTTCCCCCCGACCCCACCGAAAGACGTCTCGCCGGACCCCGGCCCTTCTTCTCCGACCTCCACCACTGCAAGAATGGACGAAAAGGAGTCCATCAAGTACCAAGTGTCCATCGCTGACGGGATGAAAATGGAGGGATGTAGCCCTCTTCGGGGAAGCCTGGCTATGAGCGCCCAAACACCGTCCACGCACCATCCCATCCCAACCTACCCGACGTACTCCCTCCCCGCGCCACACGAGTACGGCGGCGGTCTGTTTCATCCTGGTACCCTCCTCAGCGGATCCGCTTCAAGCTTCACACCTAAATGCAAAAGCAAGACGCGGTCGTGCTCAGAATTCTGCACAGAGGGGCGTGAATGTGTGAACTGCGGAGCCACCTCCACCCCGCTGTGGCGGCGGGACGGAACGGGCCACTACCTCTGCAACGCGTGCGGCCTGTACCACAAGATGAACGGCCAGAACCGACCCCTAATCAAGCCAAAGCGCAGACTGTCTGCTGCGAGGAGAGCTGGCACCTGCTGCGCGAACTGCCAGACAACCACGACCACTCTTTGGCGGCGCAACGGGAACGGTGACCCGGTGTGCAACGCCTGCGGGCTCTACTACAAACTCCACAACGTCAACAGGCCGCTGACCATGAAAAAAGAAGGCATCCAAACACGCAACCGAAAGATGTCCAGCAAGTCCAAGAGGAGTAAACGATCTGGCGAGGGTTTCGAGGAGCTCTCCAAGTGCATGCAGGACAAGACCTCTCCGTTTGGCAGCGCCAGCGCTCTGGCGAGCCACATGCCACACATGGGCCACCTGCCACCGTTCAGCCATTCCGGACACATGCTGCCCACTCCGACTCCCATCCACCCCACATTCAGCCACCCTCACCACTCCAGCCGCTCTCCCGCCTGGGCCGAACCTCACTGAAGACCCGGCGCTCGCTCTCGCCTTCCCCTCGCCGGGGGGGCCCACGCGTTAGCTCCTCCATACCGAAAACCTACCACGCAAAAAACCCTCCCCTCCTCCTCCCGTAACGAAACCTTCCATAGGTGAGGGACGCGAAGGGGTCTCGTTCCCGCTTGGGACACCGCAGAGGAAGGTGTCATCTCATCGACAACCACGTCAGCTTGTATAGAGGACGGTTTGCGCGTTTTAAGAAGCGCCTCTCCCTTTTCAGACACTGAGGACCTTCACGGACGGagcagagggagagagagctaTCTTTGCTTTTAGCTTTTCGTTACGTTTTACTGAGTCACTTTGGTACTGTCCTGAAAGAGAGGATGTGTCTTTGCAGATTCACTGCGTGGCAGTTCCTTCTCAGAAACTCTCTGGTTACGGACTCGCTCTGACTCTCGGGAgtcaaagaaagagagaagaccACTAAGTTTATCCCCCCCCCCCCTAACATGCTGGAATACACCCCCCTCGGGCATGATTCCCTCTGAATGGACTCTATGGATACGACATACAAGCAAAGAAATGTTTATAAAGGTTAATTGTTATTatggttattgttattatgataatttattttcactctTTATCTCTTTTTTCGCTTTCCTCAGAACacattgttatataataaatattatttgattgttattgattaaaaaaaaacaaaaacactgacctATCCTAGCCAAGGCGATGTTGCTGAGCTGTACGTTTTTATCATTTTCCATTAcacaaataaaggaaataaagttttaatactTCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048821 erythrocyte development biological_process
GO:0003190 atrioventricular valve formation biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0035912 dorsal aorta morphogenesis biological_process
GO:0045637 regulation of myeloid cell differentiation biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116630 lncRNA upstream 102943 3001119 ~ 3002991 (+) True G78797
TU116609 lncRNA upstream 292652 2812377 ~ 2813282 (+) True G78784
TU116594 lncRNA upstream 405231 2700395 ~ 2700703 (+) True G78772
TU116577 lncRNA upstream 617381 2488214 ~ 2488553 (+) True G78757
TU116442 lncRNA upstream 1166848 1936860 ~ 1939086 (+) True G78674
TU116652 lncRNA downstream 1405 3115425 ~ 3116430 (+) True G78815
TU116746 lncRNA downstream 174181 3288201 ~ 3291400 (+) True G78886
TU116758 lncRNA downstream 272261 3386281 ~ 3391193 (+) False tmem167b
TU116759 lncRNA downstream 277544 3391564 ~ 3391790 (+) True G78898
TU116921 lncRNA downstream 425968 3539988 ~ 3541069 (+) True G79002
XM_043252456.1 mRNA upstream 21833 3077381 ~ 3084101 (+) True rpn1
XM_043251702.1 mRNA upstream 29495 3058375 ~ 3076439 (+) True LOC122353826
XM_043251700.1 mRNA upstream 29495 3058375 ~ 3076439 (+) False LOC122353826
XM_043251701.1 mRNA upstream 29495 3058375 ~ 3076439 (+) False LOC122353826
XM_043251706.1 mRNA upstream 53858 3048774 ~ 3052076 (+) True glt8d1
XM_043252002.1 mRNA downstream 98969 3212989 ~ 3225618 (+) True itih3a.2
XM_043252001.1 mRNA downstream 111790 3225810 ~ 3241259 (+) True itih3a.1
XM_043252003.1 mRNA downstream 130809 3244829 ~ 3253849 (+) False dnajc16l
XM_043252004.1 mRNA downstream 130828 3244848 ~ 3253849 (+) True dnajc16l
XM_043252513.1 mRNA downstream 149609 3263629 ~ 3267276 (+) True si:dkey-33m11.7
TU116622 other upstream 279140 2825539 ~ 2826794 (+) True G78790
TU116585 other upstream 425792 2678135 ~ 2680142 (+) True G78763
XR_006252148.1 other upstream 1227807 1878021 ~ 1878127 (+) True LOC122354697
unassigned_transcript_1620 other upstream 1229020 1876831 ~ 1876914 (+) True trnas-gcu_27
unassigned_transcript_1619 other upstream 1229245 1876619 ~ 1876689 (+) True trnap-agg_19
TU116720 other downstream 156179 3270199 ~ 3272619 (+) False camk2n1
TU116721 other downstream 156663 3270683 ~ 3272619 (+) True camk2n1
TU116739 other downstream 244239 3358259 ~ 3361290 (+) True LOC122353713
XR_006252154.1 other downstream 632630 3746650 ~ 3746742 (+) True LOC122354703
XR_006252155.1 other downstream 632907 3746927 ~ 3747012 (+) True LOC122354704

Expression Profile