RNA id: XM_043252602.1


Basic Information

Item Value
RNA id XM_043252602.1
length 1719
RNA type mRNA
GC content 0.40
exon number 3
gene id si:ch211-1a19.2
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 14651265 ~ 14653122 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGAAAGATATGATTGTATAAAATAGCAGAAAAATAACAGGgctatttttattatctaattAAAGCTACAAAAAGTTGGTGGGGGGAAttcattacttgaaataaattaaaaataacagaatttttgtATAGTTTAACTTGTAATgcgctaaaataaaaaaataaataaaaattacaaaacaaaaaaatcaaaaactgaaatggaaagtatcaaataaaatgtacttattaaataatgaattaaatttttttagctATTAGTGATAGTACACTGAAAGTGCTGCAAACACCTGTATTAGTtctataatgtatattaaacattaaatattaaagacatGAATTTTTCCCAAAACCTGATTAGTTTACTCTGTGAAGGAATCAACAGTGCAATGGTTGATTGCTTTTAAATGGACCATCTGCTCACGGCATACGAGCACAAGGGACGTTCTTCCCTCAACCGTCAACTTCTTAAGAGTCAACACTGAATCCAATCAAGCTTCACTGCCTCTAGAGCGAAATTACACCTCACACGCACAACACATACAAAGAAATTAAACGAAACAGAACCGAGATGAGCGAGAATAGAAAGGCAACTATCGGGATTATCATTATTATCTCTCTTGTTCTTCTGCGTGCTGCATCGGGTGAGAAGGAGCAGATGGGCCAGATGTTTAGCAGAGGACTTCGGCTGATCGTAGAAGCCCCTCGCGTCCGCGCCGATCGCCAGGCCGCCCCGAAGGCGCGCATCCTTCTCCCCGCTGGAGTTCAGAGGCCTTCGGAGAGAGTGACGCTGGCCTGCGTCATCACCGGCTTACGGTCTAAAGCGGTGAGCATCGCGTGGAAGGTAAACAGAGCGACGGGCCTGGAAACACACGGCAGCTCTCCGCTAGTGCAGAGGGAGCCCGGAGGCACCTTCTCCGCCGTGGGGCTGTACTCGGTTCTGCCTCAGGAACGGAGCGGTGAGGACACGTACAGGTGTGAGGTCACGTACAGAGCGGCGGCTCACTATGATACGGTGGAGTCGTCTCTCTGCACTCCTCCAGAGGGACCCTAACCGTGTGGGGGGGCCTTTTTTAACTGCATGAGATCCATCCgcatttcactcaaaaatgtattagGCCTCCCTAATTGTCATAATACAGCCAAAAATCAAAATCGGTTCGTGTTCTGCTCTCCCTCGAGGCATTCTAGGCGTGAGGGACTTTCTTCTTGCAGATGAATCCAATAGGAGTTATctaaaaaaaacgttaaaatcatacaattgttttaaaaatgttattattactgCACTGGATGTGTGTTTCTGTTGAACAGCCCGAAACgtatataaaaatgaagataaaatgTTCTTTGCATGGCTGTGGGATGAATGCTGTAGCGCTTGCTTGCGATTTTTTGTaggaataaatcattttaatttttgggtgaactaaccctgtCCTAACGGAATAGTTTTTAGGTGAATCGTCGTCAATTGAGGGCAGCAAAATAAGATACTTATGCATGCAATGTTTCgtataaaatcatataaaagcCACATTATTCCTCTTTaatgcaaagcaaacaaaatatgaCTGTTAcgaaaaaaagtataataaactATCTGCGAATTGTTTCTAAAGGAATACAGAATGTTTGTGTCGTCTCATTATTTTCGCAATGCGGATGCATTTGTGCATTCTAAATAATGATTCTAATTAGACTCTAATTactctattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252041.1 lncRNA downstream 7724 14637124 ~ 14643541 (-) True LOC122353646
TU121205 lncRNA downstream 105562 14545107 ~ 14545703 (-) True G81889
TU121206 lncRNA downstream 107187 14541760 ~ 14544078 (-) True G81890
TU121207 lncRNA downstream 107187 14541760 ~ 14544078 (-) False G81890
TU121199 lncRNA downstream 119836 14530625 ~ 14531429 (-) True G81884
TU121253 lncRNA upstream 6587 14659709 ~ 14661280 (-) True G81920
TU121296 lncRNA upstream 145604 14798726 ~ 14799026 (-) True G81954
XR_006252092.1 lncRNA upstream 153981 14807103 ~ 14809969 (-) True LOC122354194
TU121366 lncRNA upstream 185529 14838651 ~ 14892250 (-) True G81984
TU121373 lncRNA upstream 207020 14860142 ~ 14863210 (-) True G81990
XM_043252324.1 mRNA downstream 62095 14559901 ~ 14589170 (-) False mast3b
XM_043252323.1 mRNA downstream 62095 14559901 ~ 14589170 (-) False mast3b
XM_043252320.1 mRNA downstream 62095 14559901 ~ 14589170 (-) False mast3b
XM_043252319.1 mRNA downstream 62095 14559901 ~ 14589170 (-) True mast3b
XM_043252322.1 mRNA downstream 67699 14559901 ~ 14583566 (-) False mast3b
XM_043252864.1 mRNA upstream 314 14653436 ~ 14654520 (-) True sid1
XM_043252384.1 mRNA upstream 136046 14789168 ~ 14798095 (-) False tmem259
XM_043252383.1 mRNA upstream 136046 14789168 ~ 14798095 (-) True tmem259
XM_043251580.1 mRNA upstream 462650 15115772 ~ 15126504 (-) True slc1a8a
XM_043251591.1 mRNA upstream 473520 15126642 ~ 15131592 (-) True LOC122353710
TU121170 other downstream 114873 14534718 ~ 14536392 (-) True G81866
XR_006252040.1 other downstream 199525 14442601 ~ 14451740 (-) True chrna4b
TU121063 other downstream 723785 13856300 ~ 13927480 (-) False G81799
TU121103 other downstream 764000 13885683 ~ 13887265 (-) True G81829
TU120846 other downstream 951307 13698099 ~ 13699958 (-) True G81650
TU121492 other upstream 551839 15204961 ~ 15214058 (-) True G82067
TU121487 other upstream 581366 15234488 ~ 15235056 (-) False LOC122354561
TU121711 other upstream 747796 15400918 ~ 15401691 (-) True LOC122354564
TU122317 other upstream 2884381 17537503 ~ 17540171 (-) False G82585
TU122319 other upstream 2885261 17538383 ~ 17540171 (-) True G82585

Expression Profile