RNA id: XM_043252648.1



Basic Information


Item Value
RNA id XM_043252648.1
length 1139
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC122354454
representative True

Chromosome Information


Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 15172741 ~ 15175386 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GCCACCCAGCGGAATTACATTTCATACGAAACCGAATGAATCGTAATACCGGCGAGCGCGATGGCGGCAGCTGGACTTCAGAAACAAACGTGGGACGTCATACACTGCCTCTTACAAGATGAGCTCAGTTTTGACATGGTGGAGGCTGACGGCCCTGAAGATGAGAACTCATTTGACCCTGTAAAAATAGCCTCAAAGCTCAGGGAACTGGGAGACGATTATGATGAGAAAGTGATCCAGccattaatgaaaaatgtacagaaaGCTGCAGCCGATCAGGTGGTGACTGCCTTCAGCGACGGTGTGGACAGCTTGTGTAATATGTGGGTCGTGGAAAGAGCTGAAGTGGCCTCAGAGAAGCAGCTTCTCAAGGCCGCCATCACACTGGGACTCTTCATGAAGAGAAACTGCCCTGACATGACGAATGTGGTTGAGGACGCTATGACGGGATTCGTCAACAACCGTCTAACAAACTGGATTGCAGAGCAAGGAGGCTGGctcTCTGTCTCTAAGAACAGCATGTCTTGAGATTGGAGCTTACCGTCTCGTTCTCAGAGACCTTCAATCATTCTGCAGTTTTGATTCGTAACGCagaatgaattttaaatgtcaatCAGATGTCAAGGTGCTCTTTTCAATCACAACCagcaaatgtttacatttttattctaataCAGATATTTGCGTTTAAACTAAAGCAGGAGCTCTCAGCcaacagtgctttttttttttttttttttttttttttttaaatgattcacaaaacttattttataaatgtgttggTCTGATAGGCACATGGATGTTGTAGTAAACGTTAGTGAAATGCTAAGACTTTTCTATCACTATCAGATCAACATCAATAAACATCAAGTCCACATgttgagacatttttttttgtggtttatggttTTATTACAACCTAGCAACAAAAAGGAATTAACATCATTGCTCACTAATAATGACTGGGccactttaaaattaattaaacgcAAGCGTGCTTATGTTTTActaaaaaatgatttgatatGCCTCACTTTTAGTAACGAGCTCTTTATTTGTTGGGAAAATACAGTGTTTGCATTGTTTGGGCCAAATAAAACCATTGCTTCTGAAGGCTTTATTATCAGgaaacaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU121470 lncRNA downstream 7136 15165405 ~ 15165605 (-) True G82053
TU121449 lncRNA downstream 60003 15111001 ~ 15112738 (-) True G82037
TU121458 lncRNA downstream 65857 15105914 ~ 15106884 (-) True G82044
TU121395 lncRNA downstream 113205 15059204 ~ 15059536 (-) True G82009
XR_006252121.1 lncRNA downstream 265246 14894364 ~ 14907495 (-) True LOC122354533
XR_006252124.1 lncRNA upstream 32934 15208320 ~ 15208834 (-) True LOC122354566
TU121666 lncRNA upstream 114262 15289648 ~ 15291976 (-) True G82173
TU121669 lncRNA upstream 122530 15297916 ~ 15298875 (-) True G82176
TU121671 lncRNA upstream 125040 15300426 ~ 15301171 (-) True G82178
TU121670 lncRNA upstream 126681 15302067 ~ 15302341 (-) True G82177
XM_043251590.1 mRNA downstream 34429 15132325 ~ 15138312 (-) True sgta
XM_043251591.1 mRNA downstream 41149 15126642 ~ 15131592 (-) True LOC122353710
XM_043251580.1 mRNA downstream 46237 15115772 ~ 15126504 (-) True slc1a8a
XM_043252384.1 mRNA downstream 374646 14789168 ~ 14798095 (-) False tmem259
XM_043252383.1 mRNA downstream 374646 14789168 ~ 14798095 (-) True tmem259
XM_043251646.1 mRNA upstream 22416 15197802 ~ 15200640 (-) True LOC122353766
XM_043251647.1 mRNA upstream 29553 15204939 ~ 15205734 (-) True LOC122353767
XM_043251648.1 mRNA upstream 34052 15209438 ~ 15214245 (-) True LOC122353768
XM_043252799.1 mRNA upstream 58547 15233933 ~ 15235436 (-) True LOC122354561
XM_043251649.1 mRNA upstream 67102 15242488 ~ 15245700 (-) True LOC122353770
TU121170 other downstream 636349 14534718 ~ 14536392 (-) True G81866
XR_006252040.1 other downstream 721001 14442601 ~ 14451740 (-) True chrna4b
TU121063 other downstream 1245261 13856300 ~ 13927480 (-) False G81799
TU121103 other downstream 1285476 13885683 ~ 13887265 (-) True G81829
TU120846 other downstream 1472783 13698099 ~ 13699958 (-) True G81650
TU121492 other upstream 29575 15204961 ~ 15214058 (-) True G82067
TU121487 other upstream 59102 15234488 ~ 15235056 (-) False LOC122354561
TU121711 other upstream 225532 15400918 ~ 15401691 (-) True LOC122354564
TU122317 other upstream 2362117 17537503 ~ 17540171 (-) False G82585
TU122319 other upstream 2362997 17538383 ~ 17540171 (-) True G82585

Expression Profile