RNA id: XM_043252732.1


Basic Information

Item Value
RNA id XM_043252732.1
length 3014
RNA type mRNA
GC content 0.47
exon number 9
gene id nr1d4b
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1459574 ~ 1471248 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggaaagaaagagggCGTGTGAAACGGAGCAACAGTTCTTGGCATACAATAACACAAACAATTTAAAGGGCAACGAAGGGAGGGGGGAACTAGTGAGGGGGGGAAACTCAGTCACATTTTTAAGACACCTGAAAACGTGTCCGGTGTTTGTATGGGATGCTCGTGAATGCCTCGAACTAGTTACACGGCTCTTGGAGGACGATGCCAGCGCACCGGCTCTGAAGAGCAGCGTCTTTGAGGACATCTTCCAGAGACATCACAGCATCTCTTCTTTCTCGAGACACTTCACAGACTTCTTGAAGTTCTTACCTGTCCGGACGGAATTCGAAACACGCTGAAAATTACAGAGTCCACTCAGACGCCCGCATTTCCTTCACCGACACCGGGAACAGGCGCCATGGACGGCAGCCCAGGTGGAGGAGTAATCCTCTATGCGGGTTCAACTGGAAGCGCCAGCCCCAGTCCGGGAAGCCCATCCAGTGGGTACCAAACCCAATCTCCAGCCTCTCAGCCCTCGTCCCCGGAGGAGGTCTCTTTCACTGAGCTCGGTGCCCTTAAAAAACATCCAGCGGGAAGCAATGGCAGTTCGGCAGGAGGCAACAAACTGGTTTTCCAATTTCCAGAAGTCAGCAGTGCTACCGCTGTCAACCCTGTTACACCGACGGTAACATCATCAGGCCAAAACACCTACTCCCACCCAGTAGTGGGCAGGCGACCAAAAACCGGAGGTATGGTGTTGCTCTGCAAAGTATGTGGGGATATTGCATCAGGATTTCACTACGGCGTCCACGCATGCGAGGGATGCAAGGGTTTCTTCCGCCGCAGCATCCAGCAGAACATCCATTATAAAATGTGCGTGAAGAATGAGAACTGTCTGATCATGAGGATGAACCGCAATCGCTGCCAGCACTGCCGATTTAAGAAGTGCCTCTCTGTCGGCATGTCCAGAGATGctgtgCGGTTCGGGCGCATTCCGCGCGAGAAACAACGCCTACTGGACGAAATGCAGAGTTACATGAACAGCCTTAATGAATCAGCATCCATGGACATCACCTGTACTACACCCACAGAGACTCCTACCAGCCCTGAAGATGGCCAGTCAGAAGAGGCCATCGGTGCTATCTCGCAAGCTTATCGCAATATCTTTGTGAACGGGGAGAAGTTGTTGGTGAAGGTTAACGATGACAACAACATCAATAACAACGATCCTTCTTCCTTCCATCATAATCCAATTCAAGAGTCCGGCTACAGTCAGTCTCACCCTCAGCCAAGTATCTCACCTCAAGAACATTCCATCCATTCCACAACAAGCTGTCAACCCCAATCCAGATGCCCGGTCTCCAACCACGACAGCAAACCCACAACCCAAGTTATGGACAACGGTCACTATAACTTTCCACAGTCCTCAAGTCCCAGCCAGGGAAGTACACCTTCTCAAAGCTATCCAACGAAGCTCAACAATTACTCCACTCAAACGTCTTGTCCTTGGAGACTGAGCCCTGGTGCTAAAGTTTTGGCATGTCCACTCAACGCATGCCCCATCTCCCCAGCCAATCACTCCAGTCAACAGGTCTGGGAGAGTTTCTCCCAGTGCTTCACTCCTGCTGTTAAAGAAGTGGTTGAATTTGCCAAGAGCATTCCAGGGTTTCAGGCCCTGAGTCAACACGATCAAGTCATGCTGCTGAAGGCAGGAACCTTTCAGGTTCTAATGGTGAGGTTCTGCTCGCTGTTTGATGCCAAGGAACGTACCGTAACATTCCTGAATGGTCAGACCTACCCGCTGGCATCCTTGCGAGTTCTGGGCATGGGCGGCCTTCTGGACGCCATGTTTGAGTTCAGTGAGAAGCTGGGGAACATGGGTCTGGAGGCCGACGAGATGGCCCTCTTCATGGCTGTGGTGCTGGTTTCTGCAGATCGTTCGGGTATCTCAGACGTGGGGGCTGTAGAGCAGCTCCAGGAGGATTTGATCGGCGCTCTTCGTGCACTCATCACTCGGCGAAGGCCAGAGGACAGCTCGCTCTTCCCCAAACTCCTGCTACGTCTGCCTGACTTACGCACCCTCAACAACCAGCACTCCGAGAAACTCCTAGCCTTCCACATTGACCCCTGAGAACAGAAAGACAATTACCAGACCTACTCAAGTCGAGGTCAAAACATAGATTCAGGGTGCTCTTCTTGTACAAATAAGCCATGCATATTTCAGGACGAACATCTGATTTTGACTAGCACTTACACAGACACCTCAGACTTGCTCCACCACGAGCTGAAACTGAACTTTTCCAATGCAGCACTTGAGCAACAGAAGTACGGAGCGGACGCTGGACATTGTGACTTACAGGATtgtttaacaaataatataaaaacagaggAAGATGGTATAGATTTTGAGGATGGCTGTTTTACAGCTAAAATTAATTTGGGCTCACAGAGCAAGATCGGTGTATAAAGTTTTGGGACGTTATAAGTATTTTTCTCACTCCTGATGCTATGCATTTATCATCATATTCATCACATTGTACAACCTTTCAGATAAACTTAAATTCAGTTGCACAATTcaataatttcattaaacacattCTTATATCTCTTTGTGGAcctttataaatattgtttatatttgtcAGCCAGTCAAAACCTTGGTTgtaaaaaacatgtattataattgaaatatatgATAGTTTCTTATAAGTGTATAAGACTGTAGTATGTATTCTCGTGTGTCATGACAGAACCAGGGACAACGGGTTGTTAAATGAAGAAAGGCCTCCTTGtctattaaattgttaaaacgTAAATTACAACAGCTCTGCATGGATATGGTTTATTCTACCCTTTGCAGTTTCAAACTGAAAGAGGATGGGCTAGCTGCAAAAGTGGACTTTTTGCCATTTCCACGcaaattcagttcatttatttcacgtgcatctaaatgtatatttggTAAATgtattatgcttatttttttccatagaGATGGCAGAGTAtgtgatattaaaaaatgacctttaaagTTTT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116244 lncRNA downstream 10569 1444615 ~ 1449005 (-) True G78549
TU116250 lncRNA downstream 23645 1434638 ~ 1435929 (-) True G78555
TU116083 lncRNA downstream 68468 1389790 ~ 1391106 (-) True G78440
TU116049 lncRNA downstream 160615 1287293 ~ 1298959 (-) True G78413
TU116269 lncRNA upstream 39733 1510981 ~ 1511526 (-) True G78572
TU116270 lncRNA upstream 40757 1512005 ~ 1512232 (-) True G78573
TU116271 lncRNA upstream 41588 1512836 ~ 1513903 (-) True G78574
TU116306 lncRNA upstream 117456 1588704 ~ 1681160 (-) False LOC122354408
TU116313 lncRNA upstream 121986 1593234 ~ 1681160 (-) False LOC122354408
XM_043251638.1 mRNA downstream 4436 1449609 ~ 1455138 (-) True faim2b
XM_043251959.1 mRNA downstream 182218 1276367 ~ 1277356 (-) True si:ch73-303b9.1
XM_043251560.1 mRNA downstream 199484 1217219 ~ 1260090 (-) True phactr3b
XM_043251322.1 mRNA downstream 247890 1208200 ~ 1211684 (-) True fam217bb
XM_043251323.1 mRNA downstream 248007 1208200 ~ 1211567 (-) False fam217bb
XM_043252013.1 mRNA upstream 48084 1519332 ~ 1529182 (-) False calcoco1b
XM_043252015.1 mRNA upstream 48084 1519332 ~ 1529180 (-) False calcoco1b
XM_043252012.1 mRNA upstream 48084 1519332 ~ 1529180 (-) True calcoco1b
XM_043252014.1 mRNA upstream 48084 1519332 ~ 1529102 (-) False calcoco1b
XM_043251233.1 mRNA upstream 76777 1548025 ~ 1551955 (-) True smug1
TU116011 other downstream 237108 1217451 ~ 1222466 (-) False phactr3b
unassigned_transcript_1591 other downstream 295233 1164270 ~ 1164341 (-) True trnac-gca_119
unassigned_transcript_1590 other downstream 295920 1163583 ~ 1163654 (-) True trnac-gca_118
unassigned_transcript_1589 other downstream 296140 1163363 ~ 1163434 (-) True trnac-gca_117
unassigned_transcript_1588 other downstream 296569 1162934 ~ 1163005 (-) True trnac-gca_116
XR_006252099.1 other upstream 233376 1704624 ~ 1716129 (-) True nab2
XR_006252142.1 other upstream 391439 1862687 ~ 1862826 (-) True LOC122354691
XR_006252152.1 other upstream 393759 1865007 ~ 1865147 (-) True LOC122354701
XR_006252144.1 other upstream 396022 1867270 ~ 1867409 (-) True LOC122354693
XR_006252143.1 other upstream 398299 1869547 ~ 1869684 (-) True LOC122354692

Expression Profile