RNA id: XM_043252827.1


Basic Information

Item Value
RNA id XM_043252827.1
length 1956
RNA type mRNA
GC content 0.39
exon number 4
gene id si:ch211-253b8.5
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3704572 ~ 3715578 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTCCCGCAAAAGAGCAGAGAGATACGACCACTGGCGGTGCTGCAGAGGATGTGCACGACTGAATCTACAGCCTAAAGCCTCacagtgacagagagagagagagagagagagagagagagatgtgctgTGCTAGAGTCCAGTCTTGTTCTGGGACCTCAGACTGACTGAAGCTGCTGGTAGTTTTACAGCTGTGCATCTCTGTCACTCTGGAGTCATGAGCTCGAAGGGGACGAACCTCCACAACAAACGTCTACCGTCGGAGACAGAACACGCGCAGAGAGTCCCGGATGCAGATTCAGCCCAGCAAatgagactgagagagagacaacgATTCTTTGAGGAGGTGTTCCAACATGATGTCGATGTTTACCTTTCCTCAGCACACCTGCAGATAGATTATAAAAGAcCTCCTTTGGGAAGTATTTCATCAATGGAGGTGAATGTTGACATGCTAGAGCAGATGGACCTGATGGACATCTCTGATCAGGAGGCCTTGGATGTCTTCTTCAGTGCCAGCGGAGATGAAGGATCACTGACATCCCCTCTTCCAGCTCTTGGACACGCTGAGATAGAAGAGGATGGATTGAGGAGAAATGACGTTTCCTTGAGAATTTCTGACCCTTGCGAGATCAAATCCCGTATGTTGTCCACTTCCTCCAACTCCACCTGTGACAGTCAGGCCTCCAACGAGGACGGAACGAACACTCCTGTCGTCCAGTCAGATGATGAAGACGTGCACGAAGAAAGCATGTTACGAACAGGAGCGGCCAAAGCCAACGATGCCACAAAAGAGCAGTCTGCTCTCTCATTATAAACTGCCTCATTAATTACTGACCACTTGGGAAGTGTAACTTGTTAAGGTTGAGACTGTCTCGTGGGTGGACTGACTGGTTTTAGCCATAAATCTATCTACCAGACCTTTATGAACGCTTGTGAAATTCAAGCATCCTATTACGTCATACCGGGAGTGTCACACTTTGGCAGACTCGCATTTTTGTATTGCCACTTGCGTCTTATCAACATTTTTCTTCGGAAATAAAGGTTtggaaaatatatacattaccAATATTTTGCGATGCTCTTTACAAAGACTGATACTGCCCTGTAGAGAGCACCGGTTTGATTTAAGGTGGTTAGTCTCgtgaaaacatttccaaaagaaaacaacatgtaaaataatattttgcttaaagaaaatgaagctttttctgaacaatgttaaaaatgatttactatttactcacactcatgcGCTTCCTAACAAGGCTTTCGTCCGgaaatgtacatatatttagTGAAACCTAAGATATAAGAAGTCTTCAAGGATTCAAAGGGTCATGAAGACATAATAAAACTGCACAAAATTGTGTATTTGGCTTATTTgatgtgctttatttatttgttttagcaaTGGTTTACCAAAAAATTGTCATATAAAGTTGTTTCAACCCGTTAAAAAACTCGACTAGTTTTATGAAACATGTATAACCTCAAAAAAACggtttaaaagcttaaaaaatgtTGTGGTTGTGTGCACTTTCTGTTgtgaagatgaataaaaaatcttatcagttaaaaatgacataagGGTGAACAGATGCAGAATGTATTTTCACTTATAGGTGAACTAAGTATTTAAGGTTTGGCTTTGCatctttacattatttttttatttttttgtaacagaatGGTGATTTTCACTGCACCATTAgaatttttgatttatttaaaaccacaTAGAAGGCGATACAACAAATAAcggtgtaaataaaatattaaacaagttgaattttttttaaaaattaaagtaatgtGATTTAGTTCATAAGAATTTGAGAGGAAACTGTGTTTAATTGTTATGAAAATGATCgaaaaatactaataatgaGCATTAGTTTCCTTGTACTTGTTTGTATTTGGCTTCAACAGGACAATAAAGTGATAAGATGTAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116931 lncRNA downstream 47283 3654282 ~ 3657289 (-) True G79010
TU116869 lncRNA downstream 289648 3412874 ~ 3414924 (-) False G78969
TU116871 lncRNA downstream 289648 3412874 ~ 3414924 (-) True G78969
TU116794 lncRNA downstream 436897 3266756 ~ 3267675 (-) True G78919
TU116793 lncRNA downstream 437900 3266184 ~ 3266672 (-) True G78918
TU117014 lncRNA upstream 1111 3716689 ~ 3719414 (-) True G79069
TU117023 lncRNA upstream 37352 3752930 ~ 3759723 (-) True G79075
TU117025 lncRNA upstream 37352 3752930 ~ 3756266 (-) False G79075
TU117041 lncRNA upstream 64421 3779999 ~ 3780317 (-) True G79083
TU117114 lncRNA upstream 393526 4109104 ~ 4112070 (-) True G79126
XM_043251592.1 mRNA downstream 2366 3691160 ~ 3702206 (-) True cdh27
XM_043251426.1 mRNA downstream 16292 3684518 ~ 3688280 (-) False LOC122353608
XM_043251425.1 mRNA downstream 16299 3683809 ~ 3688273 (-) True LOC122353608
XM_043252514.1 mRNA downstream 247638 3454410 ~ 3456934 (-) True lhfpl5a
XM_043252883.1 mRNA downstream 318781 3381485 ~ 3385791 (-) True si:ch211-160o17.6
XM_043251519.1 mRNA upstream 17404 3732982 ~ 3742362 (-) True bmp7a
XM_043251298.1 mRNA upstream 31915 3747493 ~ 3749711 (-) True smim7
XM_043251552.1 mRNA upstream 69953 3785531 ~ 3791150 (-) False zgc:113223
XM_043251551.1 mRNA upstream 69962 3785540 ~ 3791150 (-) True zgc:113223
XM_043252515.1 mRNA upstream 97927 3813505 ~ 3834923 (-) True LOC122354343
XR_006252141.1 other downstream 25646 3678762 ~ 3678926 (-) True LOC122354690
TU116923 other downstream 163517 3540001 ~ 3541055 (-) True G79003
TU116704 other downstream 590880 3112933 ~ 3113692 (-) True G78853
XR_006252153.1 other downstream 648799 3055697 ~ 3055773 (-) True LOC122354702
TU116673 other downstream 656514 3046747 ~ 3048058 (-) False spcs1
TU117055 other upstream 98055 3813633 ~ 3823098 (-) False LOC122354343
TU117044 other upstream 197670 3913248 ~ 3914635 (-) True G79085
TU117068 other upstream 247336 3962914 ~ 3965777 (-) False si:dkey-197i20.6
TU117706 other upstream 2380555 6096133 ~ 6096480 (-) True G79565
TU117850 other upstream 3098047 6813625 ~ 6847758 (-) False vamp3

Expression Profile