RNA id: XM_043252882.1


Basic Information

Item Value
RNA id XM_043252882.1
length 2007
RNA type mRNA
GC content 0.50
exon number 2
gene id b3galt6
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3378085 ~ 3381338 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGACCGTCCGGTCCGGTAGGCGGCGCTCGTCGCCCGCGCAGCTGTCGGGGCGTCGCGGCTTCTTCGGTCCGTGGTCGTGAACGGGAAGTGCGGAGCGTGTGCGTGCGTTTGAGCtggaaaaaacataataataatgacgCGCTCAAAACGCGAATTAAAAAGTGTGTCGTTTTTAGTCGTTGCGGGAGGCGCGTGCGCCTGCTGCGTGTAAATATTGTGCGCTTCGTCTGGAGAGGCAGAAGACGGCGAGTTGTGGTTCATCTCCAGCCCGTCCACAGctgctgcaaaacaaaacagcctCTTATGATAAAGATGCTCAGGATGATTCATAAGCGTGGTAAATGATTACTTTCAGGGGACTCTAAGTTACCAGTGACATCATGAATTTGGTCCGTCTTGTGTGTCGTCACAAGACTGCCCTGGCACTCGGTGTCTTCTTCCTATTTGCCGTCGTCCTTCTGTTTCTCGCCAAATGCACGTCAGAGACGCTGAAGCCAGCCGAGTCCCCAGGTGTGGCGCCACGGGCCGAGTCCCATCAGAAGCAGCCGGCAGGGCCTCCTCGCACCAAAGAGCTCTCCACGTTCCTGGTGGTTCTCATCACCACGGGCCCAAAGTACACAGAGCGGCGCAGCATCATCCGGAGCACCTGGCTGACCAAACACGATCCCGACGTTCTCTACTGGTTCGTCATCGGCACCGAGGGTTTGCCTCCAGAAGACCTGCAGAACCTGGGCACCGAGCAGATCCGTCACCATGACCTCCTCCTGCTCCCTGACCTCCGGGATTCGTACGAGAACCTCACGCTGAAGCTCCTCCACATGTACTCCTGGTTGGACCAAAACGTGGAGTTTAAATTCGTCCTGAAGGCTGACGATGACACCTTTGCTCGCTTGGATCTCCTCAAAGACGAGTTGAAGGCCAAGGAGCCGAGCCGACTCTACTGGGGCTTCTTCTCTGGCCGCGGGAGAGTGAAAACGGCCGGGAAGTGGAAAGAAAGTGCCTGGGAACTGTGCGACTACTACTTACCCTATGCTCTGGGTGGAGGCTACGTGCTTTCCGCCGACCTCGTGCACTACGTGCGTCTCAACGTAGGGTTTCTAAAGACCTGGCAGAGCGAGGACGTGTCCTTGGGTGCCTGGTTAGCCCCTGTAGACGTAAAGCGGGTTCACGACCCACGCTTCGACACGGAGTACAAGTCGCGCGGCTGCAGCAACAAGTACCTGGTCACTCACAAGCAGAGTTTAGAGGACATGCTGGAGAAGCATCAGACACTACAGCGCGATGGGCGTCTGTGCAAAGAGGAAGTCAAACTGAGGCTGTCCTACATTTACGACTGGAACGTCCCGCCTTCGCAGTGTTGCCAGCGGAAGGATGGCATCCCCTGACTCTTTGACACCCGTGATCTTATGCATTTTTTCCACtcgctatttatttatttattatcagtgtcgTGTGTCGAGCCGAAACAGCATTTCTTAACCTTTtgaaaaggctttttaaatTAGAAACGTGGGAGATTATATTACCGaaaaagctgcttttatttgagaCCGAGAGATTCTTTCTGATTCTAAGTGGAGTCGGAGATCCTGGGGGATTGTGGGTGACGTTATATATTTCTGCTGTATTCTCCGCATACACCTTCTTCTGTACATCCATAGAGATCTCCATTTTACCGTTCGTTTATAATCCTGAGATGTTTAGAGCGTGTCTgttgaaatacatttacatgGACGAGAAAAGGAAAGTGCCAGACAAGCAGTTTATTAAAGAAACTTGaagataaatgtttataaaccTAAGTATTTTGACATATGTTGTCCGTTGTGATGGAAAACCCGAGATGGTTTTCTTTGTGAGTTTTACTCACAGATTTGCCATATAATGATAAAGCCGTCTTAAATGGAGAACTTTGGCAGCATTTCTAGTATTTTATGTGTTGTGACTGAGTTGTAAATAACGTACctcaaattttattaaatgtttttgttccgTTTTTACACCAGA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0047220 galactosylxylosylprotein 3-beta-galactosyltransferase activity molecular_function

KEGG:

id description
K00734 B3GALT6; galactosylxylosylprotein 3-beta-galactosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116746 lncRNA upstream 86685 3288201 ~ 3291400 (+) True G78886
TU116652 lncRNA upstream 261655 3115425 ~ 3116430 (+) True G78815
TU116630 lncRNA upstream 375094 3001119 ~ 3002991 (+) True G78797
TU116609 lncRNA upstream 564803 2812377 ~ 2813282 (+) True G78784
TU116594 lncRNA upstream 677382 2700395 ~ 2700703 (+) True G78772
TU116758 lncRNA downstream 4943 3386281 ~ 3391193 (+) False tmem167b
TU116759 lncRNA downstream 10226 3391564 ~ 3391790 (+) True G78898
TU116921 lncRNA downstream 158650 3539988 ~ 3541069 (+) True G79002
TU116950 lncRNA downstream 320407 3701745 ~ 3702033 (+) True G79021
TU116951 lncRNA downstream 322903 3704241 ~ 3726091 (+) True G79022
XM_043251593.1 mRNA upstream 463 3361803 ~ 3377622 (+) True hipk1b
XM_043251594.1 mRNA upstream 16427 3358210 ~ 3361658 (+) False LOC122353713
XM_043252381.1 mRNA upstream 21929 3300384 ~ 3356156 (+) True acap3b
XM_043252380.1 mRNA upstream 26073 3300383 ~ 3352012 (+) False acap3b
XM_043252005.1 mRNA upstream 92545 3278801 ~ 3285540 (+) True ddx19b
XM_043251276.1 mRNA downstream 4920 3386258 ~ 3391229 (+) True tmem167b
XM_043251349.1 mRNA downstream 11445 3392783 ~ 3414919 (+) True mapk14b
XM_043251348.1 mRNA downstream 11446 3392784 ~ 3414919 (+) False mapk14b
XM_043251342.1 mRNA downstream 33715 3415053 ~ 3452141 (+) True srpk1b
XM_043251347.1 mRNA downstream 33715 3415053 ~ 3452141 (+) False srpk1b
TU116739 other upstream 16795 3358259 ~ 3361290 (+) True LOC122353713
TU116720 other upstream 105466 3270199 ~ 3272619 (+) False camk2n1
TU116721 other upstream 105466 3270683 ~ 3272619 (+) True camk2n1
TU116622 other upstream 551291 2825539 ~ 2826794 (+) True G78790
TU116585 other upstream 697943 2678135 ~ 2680142 (+) True G78763
XR_006252154.1 other downstream 365312 3746650 ~ 3746742 (+) True LOC122354703
XR_006252155.1 other downstream 365589 3746927 ~ 3747012 (+) True LOC122354704
unassigned_transcript_1800 other downstream 402626 3783964 ~ 3784035 (+) True trnaq-cug_17
unassigned_transcript_1801 other downstream 526178 3907516 ~ 3907588 (+) True trnaq-cug_18
XR_006252088.1 other downstream 679592 4060930 ~ 4149729 (+) False adgrl2a

Expression Profile