RNA id: XM_043252883.1


Basic Information

Item Value
RNA id XM_043252883.1
length 1854
RNA type mRNA
GC content 0.45
exon number 6
gene id si:ch211-160o17.6
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3381485 ~ 3385791 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGGTACCGGGCCACACCCCAGCGGTGTTTGTGAATTACCCGAACCCGTCTAAATAGTCCGAATATACTTAAGACGATAGGTACACCGCAGAGATTCAGGACaagccactttttttttgcagtacgCTCTATGTCAAATGCGTCTGATGAGTGGAATATAATTCAGCGCGGAAAACACACGCGCTGCCTGCTTACTATTGTCGATAGCAGATATGTTTTAAAGACGCAGTAATCGTCAATCAGTGCTGAATGAGACCGACACCCATCGTGACACAGACCCGAGTGTTTCTCCTCCCGCCTCTAATAGCATCCTGCTGATCCTGGCAGGGTCTCTCAATGACAATGTTCTTGGCAGGAGAAAGAGAGCAGAAGGTGTGCTCAGCTGTCGTCTGACAGTACTTGGCAACCTCTGTGTTggcatgttttatttgtgtgtgcggATCCTAATGTAAGCCATTAGTGCCTACCGCCATTACGTCATGGTTTCTAAAAGCATTAATGGTAAAGTTGTTCTCCTGTTATCATAAAAATGCCACCTGGACCGTtagaagtatttaaaaatgttgttcaaAGGCTACACAAATTCAGTGTGTTCTCTGCCTGTTGAGAGAATGGGTCTTAGCAGATGCATTTTGGTAGGGAACAAAGCAGGTCACTTCTAAATGGGATTGAATCTGTATGTAATCCACCATCTGTCGGGCAACGGGCATCATGCTGAGCCGTCCCGTCCCGTATCGTCCTCCTCCTGCTACAGACCTGTGCTTCAGCATGCTGCTGTATTACAAAACACAGGTTATTTCACAAAGAATTGGACAGAAGAATCAGCATACAGAAAGCTCCAGCTGTGGCTCTGCTGCGTCTCAGCAGACTACTGAAGGTCTGGACGATCTCATTCGACCGAAGAAACTGTCCAACCCTGTTTCGGAGTCTTCTAGTCGTAGAAGTTTACATCGTGAGCTGCTAGTCAGCCACAGATGGGGTCTCCTGCCTGAGGAGAAGCCGGAGCTGAAGCGGGTGCTGGAACAGAGGAGACTGGAGcagtgcagagagagagaacaagccTTACATCCACCGTCTGACCTCGAGCAAGAGCTGCACAAGAGACGCCAGAGACTCCTGGAGTATGAACAGGAAGAGCTGAGACGCAGAGAGCACCTACAAAACATGCCAGAGTTTGTTCGTGTGCGGGACAACCTGAGACACATCACCATCGCAGGCTACTGAACCAACAGAGGACAACAAAGATCCATTTTCTCGAGGAACTGGTTTTTTTAATCACCAATATGATTCAGTCATTTTgcgtttttgcattttgctcTCTCAGCGCAACCAAAATCTGAAATGGCTATCATAGTgtacaaatgactttttttaaatcacaatccAGGGCCCATTTAGAAAATGCCACTCTTAACGTGGCTGATCGATCGCAGgaagccccgccttctgaataaaatagccaatcgcTGATCTGTGAAGTCAGTGCATCACTGCATCTGCTGTTAAAATTCCGGTTGCTGTAGAAACGGTCATGCGAGACATTTTTTGAGACATGAGACGTGCACATGCGCACTGGATGATCTTGTctgagaaataagctttttatagctctatttgagcaaaaaaaaaaactattaaagttgttgtcagatttcattggtgttttgaaatattaattttaatcataAGCTTAATGAACAATTTGGAAGAATTTGACGTTTCCCAATTCAAAGAGATAGGAGCCACACTAAAGATGGCCACCAAGTGACATGACTTGTCTTAAAGAGACCTACCTAGGTGAAAATCAACTGTTCACTGTCCATTTAGAGTGTAGTGATGCACAAAGTGCATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116794 lncRNA downstream 113810 3266756 ~ 3267675 (-) True G78919
TU116793 lncRNA downstream 114813 3266184 ~ 3266672 (-) True G78918
TU116782 lncRNA downstream 126959 3253863 ~ 3254526 (-) False cdab
TU116767 lncRNA downstream 140166 3234810 ~ 3241319 (-) False G78899
TU116869 lncRNA upstream 27083 3412874 ~ 3414924 (-) False G78969
TU116871 lncRNA upstream 27083 3412874 ~ 3414924 (-) True G78969
TU116931 lncRNA upstream 268491 3654282 ~ 3657289 (-) True G79010
TU117014 lncRNA upstream 330898 3716689 ~ 3719414 (-) True G79069
TU117023 lncRNA upstream 367139 3752930 ~ 3759723 (-) True G79075
XM_043252008.1 mRNA downstream 82423 3285961 ~ 3299062 (-) False pusl1
XM_043252007.1 mRNA downstream 82423 3285961 ~ 3299062 (-) True pusl1
XM_043252011.1 mRNA downstream 117371 3256879 ~ 3264114 (-) True si:dkey-33m11.8
XM_043252009.1 mRNA downstream 125273 3253863 ~ 3256212 (-) True cdab
XM_043251705.1 mRNA downstream 323055 3052696 ~ 3058430 (-) True gnl3
XM_043252514.1 mRNA upstream 68619 3454410 ~ 3456934 (-) True lhfpl5a
XM_043251425.1 mRNA upstream 298018 3683809 ~ 3688273 (-) True LOC122353608
XM_043251426.1 mRNA upstream 298727 3684518 ~ 3688280 (-) False LOC122353608
XM_043251592.1 mRNA upstream 305369 3691160 ~ 3702206 (-) True cdh27
XM_043252827.1 mRNA upstream 318781 3704572 ~ 3715578 (-) True si:ch211-253b8.5
TU116704 other downstream 267793 3112933 ~ 3113692 (-) True G78853
XR_006252153.1 other downstream 325712 3055697 ~ 3055773 (-) True LOC122354702
TU116673 other downstream 333427 3046747 ~ 3048058 (-) False spcs1
unassigned_transcript_1799 other downstream 394954 2986458 ~ 2986531 (-) True trnai-aau_68
unassigned_transcript_1798 other downstream 396368 2985044 ~ 2985117 (-) True trnaf-aaa
TU116923 other upstream 154210 3540001 ~ 3541055 (-) True G79003
XR_006252141.1 other upstream 292971 3678762 ~ 3678926 (-) True LOC122354690
TU117055 other upstream 427842 3813633 ~ 3823098 (-) False LOC122354343
TU117044 other upstream 527457 3913248 ~ 3914635 (-) True G79085
TU117068 other upstream 577123 3962914 ~ 3965777 (-) False si:dkey-197i20.6

Expression Profile