RNA id: XM_043252888.1


Basic Information

Item Value
RNA id XM_043252888.1
length 1561
RNA type mRNA
GC content 0.60
exon number 8
gene id LOC122354629
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11384307 ~ 11391458 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acacacacacactcgtcagTAGTCGACCGAACGCCCGTGCGATGGCCCTCCGTTTCCTCCTGTTGTCACTCTGCGGTGGTCTGCTTCTGAAGCCGGTTCTGTCTGGACCCAGCGAGGCCTACGTGAGATCTCAGGTCCAGTTTGACTGTGCGGTTCCAGGCTGGTCTTCACCTCTGACCTTTGAACTCTTGAAGGACGCTGGGGATCTCATCGCGGCAGAGAGCAACGTCAAGGTCACCTTCACCCTACAGGTCACCGAGGGGTCAGCGGGCGAGTACTACTGCAGACTGACCTCCGGGGGTCAGACCAGCAACTCCATCCACCTCCATGCAGTGATTCCTGTGGTAGGAGCCCGTCTGAGCTCAGAGCCCGATCCAGCGGTCATCTATGAAGGACAGAAGCTGGTCCTGCGCTGTCTCGTCAGGAAGGGGACACGTCTGTCCTTCACGTGGTACCAGGACGCACAGCTAGTGACCTCCTCGTCCGAGCTCCACCGGCTCTCTGGAGACACTCTCACGGTGGAGCGAGCGAccgcagtgcatgctgggatataCTCGTGCACGGCTCAAAACCAGATGAGCGTCAACCCCAGATTCTCCAGCAGCCGAAACCTCCACGTCACGGTCAAAAAGCACATGTCGGCGCCGTCGTTATCCTTCTCGGTCTTCTCTAACGGCTCCGGGCTGACGGCTAACATCAGCTGTGGTTCTGAGCGAGGCTCTCCGCCCGTGACGTTCAGACTGATGCTGGACGGCCGGGAGCTGGAGGCCAAGCGAGAGGATTCGCTGGAGTCCTGGTTCCTTCTGCCCGTCTCTGAGGGCCGGGATCTGGGAGCCGCTCGATGTCAAGCTCAAACGGACACACAGCAGCTAATATCTGATCCCGTACGTTTACTCGTGGTTCCAGTAGGTGGCGCTGTGCGCGTCACGGTACAGTATCTCCACGACGCCGACGGGACGCTGGCAGCCGCCCGGCTCCGATGTGTCCCAGACAGAGGAACCTTCCCAGCGTTCTCCTGGAGTCTGAACCGCTCGTCTCTTCCAGCGGAGGGCAGCGCTCACGCGGTCGCTGGCGGCGGTCAGATCCTGATCCTCACCGAGGTCAGAGCCGGCGTCTACGGCTGCAGGGCGAGGGACAGTTATAACCTCAGCTCGGTCTGGGTGGAGAGCGAGGACGTCTTGGTCCAGAGGACAGATTTGGCTGCGATGTCGGTGGAGGCCATCGCGCTGATTTTCTGCGGGTTCCTGTCGACTGTGATCGTGTCAGGCTCGTTCTTTGTGTACTGGAGCACCAAGCGGAGTAACGACGCCTGCAAACGTCACAGTCACCAGGATGTGATCCAGTCTGAGATGATGAGAACATTTCCAGCAGCCGGTGTTTCCTCTGAACCTGTGGAAATGAAAACGGTCATCGTGGAGCTTGAGGCCTAGTCTAGACCGGACTGGACCGGACCAGACCAGACCGGACcggaccagaccagaccagaccagaccagaccagaccagaccagaccggACCGGACcggaccagaccagaccagaccagacaaGACTGGagcaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119481 lncRNA upstream 56686 11326427 ~ 11327678 (+) True G80784
TU119280 lncRNA upstream 114657 11263422 ~ 11269707 (+) True G80661
TU119453 lncRNA upstream 123989 11258381 ~ 11260375 (+) True G80766
TU119451 lncRNA upstream 133657 11249940 ~ 11250707 (+) False G80764
TU119286 lncRNA downstream 46449 11437907 ~ 11438726 (+) True G80667
XR_006252074.1 lncRNA downstream 52182 11443640 ~ 11447521 (+) True LOC122353945
XR_006252073.1 lncRNA downstream 52189 11443647 ~ 11447520 (+) False LOC122353945
TU119287 lncRNA downstream 57591 11449049 ~ 11452138 (+) True G80668
TU119503 lncRNA downstream 80513 11471971 ~ 11472301 (+) True G80804
XM_043252896.1 mRNA upstream 333 11375307 ~ 11384031 (+) True tmc8
XM_043251328.1 mRNA upstream 31893 11342521 ~ 11352471 (+) True notum1b
XM_043252618.1 mRNA upstream 135532 11227989 ~ 11248832 (+) True trappc10
XM_043251981.1 mRNA upstream 174073 11194251 ~ 11210291 (+) True ankrd13c
XM_043251982.1 mRNA upstream 194530 11185451 ~ 11189834 (+) True rfc4
XM_043252890.1 mRNA downstream 1435 11392893 ~ 11396627 (+) True si:dkey-93h22.7
XM_043252891.1 mRNA downstream 1435 11392893 ~ 11396627 (+) False si:dkey-93h22.7
XM_043252893.1 mRNA downstream 1435 11392893 ~ 11396627 (+) False si:dkey-93h22.7
XM_043252892.1 mRNA downstream 1435 11392893 ~ 11396174 (+) False si:dkey-93h22.7
XM_043252894.1 mRNA downstream 5588 11397046 ~ 11404549 (+) True syngr2b
TU119444 other upstream 157742 11222347 ~ 11226622 (+) True G80761
TU119245 other upstream 722394 10641132 ~ 10661970 (+) True G80638
TU119130 other upstream 913177 10466622 ~ 10471187 (+) True G80551
TU118515 other upstream 2502888 8879651 ~ 8881476 (+) False setmar
TU118487 other upstream 2565085 8818390 ~ 8819279 (+) True G80095
TU119266 other downstream 114224 11505682 ~ 11507771 (+) False LOC122354145
TU119267 other downstream 114224 11505682 ~ 11507771 (+) True LOC122354145
TU119512 other downstream 133601 11525059 ~ 11527042 (+) True rpl37a
TU119513 other downstream 137276 11528734 ~ 11529636 (+) False eif4a3
TU119538 other downstream 188568 11580026 ~ 11672938 (+) False LOC122354243

Expression Profile