RNA id: XR_006252142.1



Basic Information


Item Value
RNA id XR_006252142.1
length 140
RNA type snRNA
GC content 0.50
exon number 1
gene id LOC122354691
representative True

Chromosome Information


Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1862687 ~ 1862826 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


attctttcgcagaggcaatattgtagcctatgaggctcatccgaggcgcgatcattgctggttgaaaactttacccaatacctgctcgggatgacttgaaatacagtcagccttggcacTTTTGCCAGCCTCTCCGGAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006252086.1 lncRNA downstream 121669 1739700 ~ 1741018 (-) True LOC122354127
TU116306 lncRNA downstream 181527 1588704 ~ 1681160 (-) False LOC122354408
TU116313 lncRNA downstream 181527 1593234 ~ 1681160 (-) False LOC122354408
TU116271 lncRNA downstream 348784 1512836 ~ 1513903 (-) True G78574
TU116270 lncRNA downstream 350455 1512005 ~ 1512232 (-) True G78573
TU116534 lncRNA upstream 60879 1923705 ~ 1924282 (-) True G78726
TU116575 lncRNA upstream 620844 2483670 ~ 2484844 (-) False LOC122354525
XR_006252118.1 lncRNA upstream 620869 2483695 ~ 2484928 (-) True LOC122354525
TU116576 lncRNA upstream 624658 2487484 ~ 2487836 (-) True G78756
TU116591 lncRNA upstream 833583 2696409 ~ 2696697 (-) True G78769
XM_043251544.1 mRNA downstream 12396 1828407 ~ 1850291 (-) False gdf11
XM_043251543.1 mRNA downstream 12396 1828407 ~ 1850291 (-) True gdf11
XM_043252517.1 mRNA downstream 39939 1802745 ~ 1822748 (-) True timeless
XM_043251571.1 mRNA downstream 65022 1789752 ~ 1797665 (-) True pmela
XM_043252505.1 mRNA downstream 76340 1778309 ~ 1786347 (-) True mmp19
XM_043252730.1 mRNA upstream 20819 1883645 ~ 1889186 (-) True r3hdm4
XM_043252491.1 mRNA upstream 26853 1889679 ~ 1913851 (-) False abca7
XM_043252490.1 mRNA upstream 26853 1889679 ~ 1913851 (-) False abca7
XM_043252487.1 mRNA upstream 26853 1889679 ~ 1913851 (-) False abca7
XM_043252488.1 mRNA upstream 26853 1889679 ~ 1913851 (-) False abca7
XR_006252099.1 other downstream 146558 1704624 ~ 1716129 (-) True nab2
TU116011 other downstream 640221 1217451 ~ 1222466 (-) False phactr3b
unassigned_transcript_1591 other downstream 698346 1164270 ~ 1164341 (-) True trnac-gca_119
unassigned_transcript_1590 other downstream 699033 1163583 ~ 1163654 (-) True trnac-gca_118
unassigned_transcript_1589 other downstream 699253 1163363 ~ 1163434 (-) True trnac-gca_117
XR_006252152.1 other upstream 2181 1865007 ~ 1865147 (-) True LOC122354701
XR_006252144.1 other upstream 4444 1867270 ~ 1867409 (-) True LOC122354693
XR_006252143.1 other upstream 6721 1869547 ~ 1869684 (-) True LOC122354692
XR_006252159.1 other upstream 9340 1872166 ~ 1872305 (-) True LOC122354709
XR_006252157.1 other upstream 11823 1874649 ~ 1874789 (-) True LOC122354706