RNA id: unassigned_transcript_1572


Basic Information

Item Value
RNA id unassigned_transcript_1572
length 72
RNA type tRNA
GC content 0.56
exon number 1
gene id trnac-gca_100
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1157654 ~ 1157725 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gggggtatagctcagtggtagagcatttgactgcagatcaagaggtccccggttcaaatccaggtgccccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115940 lncRNA downstream 36288 1075785 ~ 1121366 (-) False G78339
TU115936 lncRNA downstream 40191 1075785 ~ 1117463 (-) True G78339
TU115937 lncRNA downstream 80195 1075785 ~ 1077459 (-) False G78339
TU115932 lncRNA downstream 84103 1072694 ~ 1073551 (-) False G78338
TU115956 lncRNA upstream 10597 1168322 ~ 1168814 (-) True G78354
TU115978 lncRNA upstream 46151 1203876 ~ 1204107 (-) True G78373
TU115985 lncRNA upstream 54551 1212276 ~ 1213265 (-) True G78378
TU116043 lncRNA upstream 124007 1281732 ~ 1284944 (-) True G78410
TU116048 lncRNA upstream 129568 1287293 ~ 1298959 (-) False G78413
XM_043252607.1 mRNA downstream 59944 1093272 ~ 1097710 (-) True rab43
XM_043252077.1 mRNA downstream 87155 1054577 ~ 1070499 (-) False raf1b
XM_043252076.1 mRNA downstream 90598 1054577 ~ 1067056 (-) True raf1b
XM_043252079.1 mRNA downstream 111698 1044079 ~ 1045956 (-) True mkrn2os.1
XM_043251272.1 mRNA downstream 114235 1040367 ~ 1043419 (-) True mkrn2os.2
XM_043251522.1 mRNA upstream 47394 1205119 ~ 1206837 (-) True pdrg1
XM_043251322.1 mRNA upstream 50475 1208200 ~ 1211684 (-) True fam217bb
XM_043251323.1 mRNA upstream 50475 1208200 ~ 1211567 (-) False fam217bb
XM_043251560.1 mRNA upstream 59494 1217219 ~ 1260090 (-) True phactr3b
XM_043251959.1 mRNA upstream 118642 1276367 ~ 1277356 (-) True si:ch73-303b9.1
unassigned_transcript_1571 other downstream 1236 1156347 ~ 1156418 (-) True trnac-gca_99
unassigned_transcript_1570 other downstream 1453 1156130 ~ 1156201 (-) True trnac-gca_98
unassigned_transcript_1569 other downstream 3193 1154391 ~ 1154461 (-) True trnac-gca_97
unassigned_transcript_1568 other downstream 3629 1153955 ~ 1154025 (-) True trnac-gca_96
unassigned_transcript_1567 other downstream 4278 1153305 ~ 1153376 (-) True trnac-gca_95
unassigned_transcript_1573 other upstream 152 1157877 ~ 1157947 (-) True trnac-gca_101
unassigned_transcript_1574 other upstream 388 1158113 ~ 1158184 (-) True trnac-gca_102
unassigned_transcript_1575 other upstream 824 1158549 ~ 1158620 (-) True trnac-gca_103
unassigned_transcript_1576 other upstream 1259 1158984 ~ 1159055 (-) True trnac-gca_104
unassigned_transcript_1577 other upstream 1468 1159193 ~ 1159263 (-) True trnac-gca_105

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) trnac-gca-11 True 72 mRNA 0.53 1 NC_048580.1 25556516 ~ 25556587 (-)