RNA id: unassigned_transcript_1582


Basic Information

Item Value
RNA id unassigned_transcript_1582
length 72
RNA type tRNA
GC content 0.56
exon number 1
gene id trnac-gca_110
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1160502 ~ 1160573 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gggggtatagctcagtggtagagcatttgactgcagatcaagaggtccccagttcaaatccgggtgccccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115939 lncRNA downstream 1625 1075785 ~ 1158877 (-) False G78339
TU115940 lncRNA downstream 39136 1075785 ~ 1121366 (-) False G78339
TU115936 lncRNA downstream 43039 1075785 ~ 1117463 (-) True G78339
TU115937 lncRNA downstream 83043 1075785 ~ 1077459 (-) False G78339
TU115932 lncRNA downstream 86951 1072694 ~ 1073551 (-) False G78338
TU115956 lncRNA upstream 7749 1168322 ~ 1168814 (-) True G78354
TU115978 lncRNA upstream 43303 1203876 ~ 1204107 (-) True G78373
TU115985 lncRNA upstream 51703 1212276 ~ 1213265 (-) True G78378
TU116043 lncRNA upstream 121159 1281732 ~ 1284944 (-) True G78410
TU116048 lncRNA upstream 126720 1287293 ~ 1298959 (-) False G78413
XM_043252607.1 mRNA downstream 62792 1093272 ~ 1097710 (-) True rab43
XM_043252077.1 mRNA downstream 90003 1054577 ~ 1070499 (-) False raf1b
XM_043252076.1 mRNA downstream 93446 1054577 ~ 1067056 (-) True raf1b
XM_043252079.1 mRNA downstream 114546 1044079 ~ 1045956 (-) True mkrn2os.1
XM_043251272.1 mRNA downstream 117083 1040367 ~ 1043419 (-) True mkrn2os.2
XM_043251522.1 mRNA upstream 44546 1205119 ~ 1206837 (-) True pdrg1
XM_043251322.1 mRNA upstream 47627 1208200 ~ 1211684 (-) True fam217bb
XM_043251323.1 mRNA upstream 47627 1208200 ~ 1211567 (-) False fam217bb
XM_043251560.1 mRNA upstream 56646 1217219 ~ 1260090 (-) True phactr3b
XM_043251959.1 mRNA upstream 115794 1276367 ~ 1277356 (-) True si:ch73-303b9.1
unassigned_transcript_1581 other downstream 151 1160280 ~ 1160351 (-) True trnac-gca_109
unassigned_transcript_1580 other downstream 372 1160059 ~ 1160130 (-) True trnac-gca_108
unassigned_transcript_1579 other downstream 587 1159844 ~ 1159915 (-) True trnac-gca_107
unassigned_transcript_1578 other downstream 1019 1159413 ~ 1159483 (-) True trnac-gca_106
unassigned_transcript_1577 other downstream 1239 1159193 ~ 1159263 (-) True trnac-gca_105
unassigned_transcript_1583 other upstream 151 1160724 ~ 1160795 (-) True trnac-gca_111
unassigned_transcript_1584 other upstream 369 1160942 ~ 1161012 (-) True trnac-gca_112
unassigned_transcript_1585 other upstream 586 1161159 ~ 1161230 (-) True trnac-gca_113
unassigned_transcript_1586 other upstream 1034 1161607 ~ 1161678 (-) True trnac-gca_114
unassigned_transcript_1587 other upstream 1472 1162045 ~ 1162116 (-) True trnac-gca_115

Expression Profile