RNA id: TU12488


Basic Information

Item Value
RNA id TU12488
length 2559
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G8309
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 774259 ~ 776958 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

taaatgcatcaatttctaatatatatatatatatatatatatatatagtagtgtaaacttttattattgttaatgttgttaaaaaaaatctcataccTTTAGCAACATTTTTGGCGCTGcttcatgtataaatatatgggCTAAGAAACATACgaaagtaattaaatttttaagaaaaaccaagacaaaaatactgcaaaaaacCCTGTATTGTCCACATACTTTTGGTCATGAAGTGTATATCCTAACAGTATCAAGTATGACTGAGGCATGAACAACACAAGCTAAagtcaaaaatacatgaaaatgtgAAAGTGCCATTTCTTGAACAGCTCTGGTTTATGTCACACGGTGAACAAAATCAATACAGAGGCCAGGAAATGACGATCCTGGGTCAGCACTCTGAGAAATTGAGCTGACATCAATTGTTTTAATGAACAGGTTGGCCAGAGGCGTGAGCAGTATCTCATCAAAGTGCTCCATAACTGGCGCCTGCCTCCCGTTCAGTGTATCAGTCTCATATTCTCATGCCATATATAATTCTCCCTTCACGCAGCCAGTGCATCCATCTTCTTCtcctggggaaaaaaagctgtgACGGTGCTCACACGATGTCGCAGTGCTAGTCAAACATGCACAGAGTGGTGCATTAGAAGAGAAAGGCTGTCCGGGCTGAGCTGCCAGATGATGTCAGAATCACAAACTGATGTGAAAACTTGTTACGTACTGTTTCGGCGATGATAAATGTTCTTGATATACATGCAAAAAGAGTGCATGCTTAGTTtgatgggggggaaaaaaacaaggtgAAGCACAACGGATGACTCGAAGCGGTAGGGGAGCCCCAAGAGCGCTGCATTGTCTGCTGGTTTATATGATGCTACGACACTTAGCTACAGCAGCTGATCAAATTAACCTGCTGATCTGACAACAGAGGCGGTGTAGCTTCATCTCACGGGAATTCAGGATGCTGACGGGTGGTGGACAGgagtgtcatttttaaataagcaaataaggCATAAAAAATGAAGGATTGGTTACTTTGCACAGTCAACATACGCTACACTTCATACAGGCACGTTCTTGACATCTGAATTGAGTCATTCTGAATCGTTCTTCAAGTCTTTTGTCGACAGCAGACCTAGATATCGTAAGCAATGCTGCGTTCTTGTCATGGCACGTACAACAGAATATCGCTTTGTATTCTACAGTCTCAGATGAACAAATGCATATGTGTTCTTTTGTTCagggaataaataaaaaaccgGAGTAATACGTTCCTGAATGACCTATTAAGCTGCTCAAAGGATGCTTTCAATGTTACGCTTCCAAAGGGATGTCAGAGGTGTAGCGAAAATTGTTTacgatttttgtgtttttttttatttaagtaaaatgtttgACTGTGACTGTTTTCCTAAGATCTGTTTCAGTCCAATGCTCACCTATGAGAcaagaataacaataataatattataataaaaataaccgccaaataataatacatgaaacTAGGGCTGGAAGATATATCAAATTATCACGATTATTATGCTgcaggaattaaaaaaataacttaatatagCTATTAAGTTTTCTAAAGTCTGTGAAATCTGATTTAGCAGCATTACTAAAATCTAAACTGTATTAGAGTTTATTAACGTTTTGACTTTTCGTTTACATGAAAACTGTGTTTTGGGGACTGAAAACacgtattttttaaaaaaatgttagaaagtgtgtatttttgaaaatgccacCGTTATCGTTTCCGGTGATGTCCTGTGTGTGCTTAGTAAGTGTCTAGGCGAGCGCAAACAAACATACGCCACAATGGAGTATGTGGTACTGTTGTTGCTGCTAATGTTTCTTTAGCAAGTTGTATGAATTTACTTCACCGATAATATAACCAACAGTGGGGAAAAATCATATACatcatatattcaaaaatatatatatataaacgaaaatatattcaaatataatcaaaaagCTGAAGGGTATTGAAATATAActtgaaaaataatttgttatatcTGCCAGCCCTAAAGTGAGCCCACTTAAGGTAATGAAAGCTAAAGCAAGGATGTGACGTTCTTTGTAGATCTCTTCTGCAATACGTGTGCCTCGACATACACTACTTGATTGTCCAGATGAGAATAAAATGACAACATGCAAAATCCACTATTTGATCACACCAGGATCAACACGAGGTTCATTAACAACTCTCCTCGCGGTCACAATGGGCTACTTACTTCACTCAAACAACTGCCATTTGAAATCGCATTTGGAATGATTCGTTTAGCCAATACATTACTTTACGATGTAGGGGAAACGAGCCAACAGAGCTGTAGTATCAAGGGATATTCTGAACGAATGGGAGTCTTGGTCATGACAGCTGCCACTCCGGGCTGAAAAACTTGATGGGGTGCGACTTAGCCCATTTCGCGAAAACAGCCTTCTCTGTGATGAATCGGTGGCCGCCATAAGGGGCGCTCTCGTGCAAGAGGTATTCGGCACATTCGTCACGACTTCCTGCTTCATAGTAGTGGTACGGCACCT

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU12474 lncRNA downstream 79889 693580 ~ 694370 (-) True G8296
TU12449 lncRNA downstream 136469 637096 ~ 637790 (-) False G8280
TU12441 lncRNA downstream 138418 627816 ~ 635841 (-) True G8279
TU12565 lncRNA upstream 221411 998369 ~ 999161 (-) True G8375
TU12568 lncRNA upstream 221861 998819 ~ 999689 (-) False G8375
TU12578 lncRNA upstream 265787 1042745 ~ 1042950 (-) True G8385
TU12579 lncRNA upstream 269632 1046590 ~ 1046907 (-) True G8386
TU12635 lncRNA upstream 471218 1248176 ~ 1248590 (-) True G8415
XM_043254355.1 mRNA downstream 89246 680675 ~ 685013 (-) True dnajb4
XM_043254365.1 mRNA downstream 93876 668300 ~ 680383 (-) True gipc2
XM_043220108.1 mRNA downstream 170315 601914 ~ 603944 (-) False LOC122325167
XM_043219978.1 mRNA downstream 173025 597212 ~ 601234 (-) True LOC122325090
XM_043219924.1 mRNA downstream 180038 579773 ~ 594221 (-) True LOC122325065
XM_043261618.1 mRNA upstream 66257 843215 ~ 875227 (-) True pigk
XM_043257317.1 mRNA upstream 176758 953716 ~ 973343 (-) False zzz3
XM_043257300.1 mRNA upstream 176758 953716 ~ 973343 (-) False zzz3
XM_043257309.1 mRNA upstream 176758 953716 ~ 972900 (-) True zzz3
XM_043257289.1 mRNA upstream 197167 974125 ~ 995748 (-) True usp33
TU12372 other downstream 550325 198628 ~ 223934 (-) False G8237
TU12376 other downstream 551114 214738 ~ 223145 (-) False G8237
TU12374 other downstream 622629 142744 ~ 151630 (-) False G8237
XR_006246996.1 other upstream 402987 1179945 ~ 1202987 (-) False dipk2aa
XR_006247871.1 other upstream 606750 1383708 ~ 1383784 (-) True LOC122328985
XR_006247866.1 other upstream 607132 1384090 ~ 1384275 (-) True LOC122328960
XR_006247864.1 other upstream 607739 1384697 ~ 1384875 (-) True LOC122328955
XR_006247870.1 other upstream 608139 1385097 ~ 1385166 (-) True LOC122328981

Expression Profile

TU12488 Expression in all Baseline Samples

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TU12488 Expression in each Bioproject

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TU12488 Expression in each Sample
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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00033478 True 2810 lncRNA 0.37 2 NC_007113.7 9132585 ~ 9330209 (+)
rainbow trout (Oncorhynchus mykiss) TU2267689 True 1988 lncRNA 0.44 2 NC_048589.1 41626068 ~ 41628090 (+)