RNA id: TU14425


Basic Information

Item Value
RNA id TU14425
length 3588
lncRNA type read_through
GC content 0.49
exon number 3
gene id G9667
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 5770058 ~ 5831115 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttttttttttttttttttttttttttagttttatttaatgtgtttattaaatgtcaatTATAGGGAGCACaatcatttttctgttttctgtaatAGGCAAAACAGGGTAGAATGATAGTGGTCTAAACTTTATCCCACCCCTGACGAACACGATCTATCCAGTCTAAATAGCTGGAAACTTTGGTGTAGATGCCAAGTTTGTCTTTTTGTCCACAGCCTTCTCCCCAGGACACCAGACCTACAAGGAACCATGTATCATGAAACAGTGTCATCATTGGACCCCCACTGTCCCCCTCACAAGCATCTTTGATTTGCCCCAGCACTCCCCCACAAATCATGTTCTGAGTGAGATTGTTCATCATATGCTTGGAACACTCTTTGTTGTCAATAATTGGAATTTCAATGAAGTTGAGCGTTGAACTGAAGCGATGAGAAGTCTCGTTGTCCTTCCCCCAGCCAGTGACGACTGTGACCGTGCCGTTACGATGCAGCATTCGTTCGGCCAGGTTATGGCTAGGGAGGCATGCTGGGAGTATGTATGTGGAAAATTTGGCCGGCGTAGCCAAGCGCAACAGAGCTATATCATTATTCACAGTGAAAGGGTTGTATTGTGGGTGGGCAATAAGTTGTTTTACAGGAAGGGTCATCTCAGATCCTTCAATCCTAAATCGGTCGTAGTCACCTGGAGAGATGGCCATACAATTAGAATTCAAAGAGCACACCGTGTAATTAACACTTTATCTAAACTGTCTTgtggtatttattttaacatatgaGACCTAAGCTTAAACATAACATAGTAAAACATCACTCTCTAAGCTATGTGTTGTAGTACTTTTAGTGacaaattgctttttaatgcatcttCCAAAAGCCTTACACTGTCAAGAAATACTTAAATTTTTATCAAACATACCCAGTCTAACACTGAACTTTGTGCTTGTCTCTAGGCAGTGAGCAGCAGTGAGAACCCAGTTTTCATCAATCAGAACTCCACCACAATGAAACTTGCCCAAATGATTGAGTATAAGAGCCTACAGAATACACAAAATGATTTGTCTGAATATTTGGTATAATATGCTAATTATCAGGATTAGCTTGAAATATTTGTCATTGTTAAAATATGACTACACTGATATtgcaaatgaatcaaaataccTGCCAAGGACTTTCTCCCTTTTTGCCAACTGTACCTCCTATTACCCATGGCTGTAAACCTACTAAAGGCTTATTAACATAAGACGACTTTGCGATCCGAATTTGGCCACATGAAGCCTCATCTATAAATGAGAGAATTTTGGcaatacattttctaaagttgtcttgtagttggtaTCCCTTAATACAACTGCATTTGCGAGCAAGACCATCTTCACTCTCATGACATTCATGATCACAATCCCCATTGTTCACAGAGCAGTTAGTGGCTGTCCTGCCTGAGGACAAAACCAAAGAACTGCTGTCTGGACTTTTATCACTATGACCTCAACACACCACTGCTCTGTAACTCAATCTGTAACTCGGCATCCAATATTAAATGTCCCAAATCAGCTGTGGCACAGCATATCTAAAAACACTGACCAAGCAGCCGATATGTAGGAAGGGCAAAAGGATTCATTAACAACAgtaatttaaattgtataaaaacaaCAAGGTAAAAACAACTCACGCAGGTCACAGCGTTTCCCTTCAAATCCAGTGTTGCAGGTGCAGGAGTAATCTTGTAACAGGTCCACACACTTCCCATGAACACATGGATTCGAGTTGCACTGGTTTCCATCTAAAGGTGCAAAACAACTAATGAGTATGATGCTTTAAGCCTTTACAATGTATAATTTTACCACTCCAATAAGAGCAttacaaaaacactgataaacCTGGGTACGACATGTATCCAGATTGTATAATGATGACACCTCTACAAAGTTACCATAGAAGAATAAACCATGATCAGAATGCGCTAGTGGTAAACAAAAAGAGTGTGATGaatcacacatttttctttttgtgtcgAAAAAAGTGAAAGTGGCAAAAGAGGAAGGAAATAGAGTTTGAGGTGAGTGCCAGTGCGCTCACCACAGCAGATACAGGTGGAAATTTAGAATTTGGCCAGGACACCGGGGTTACACCCCTACTCTTTACAATAAGTGTCATTGTATCACGGTGAGACTGTAACAAAAGATGTCTTTGAACAGTGAAACATAGGACCACTGATTAGGCCATGATGACAATACTTTTTGGGGATATCCAAAAACTGTGCACTGTCTCAAGCTTTGAAGACATACATAACTAACCTTTATATGCTGTCCAGAATTCCAGCTGCAACACAAAAAGATCAGTGGATCATTATTTAAAGGGGAAAAAtgttaatacagtaaaaagctgACATGACCAACCGTGGCTTCCCGTGTATTAAAGATTTCCCTTGCTTCTTCAAAATCGCACAATTCCTCCCTACACTCCCGCTCCAACGATGGAGGCTTTATTTCCTCCATAAAAGTGTTGGCTCTTCTTGAACGCAGGAGCATGTGTGCTTTTTGGCTGTTAGAAAATGCTGACCAAAATAGACACAGGGTTGATAAGGCATAACAACGCACACAGAGTAGAATTCCAAATTGCTAAAGGGATAATTCATTAAGAATGAAATGTGTTAGCTGAAAATTAATTTCAtcactgctgttgtttttgcagCTAATGTTGCtgaatatcaatcaatcaaacaatcaCTCAATGAATATAAGTTAATTTTATGGTGACATGCATATTAATAAGACACAATCTTTAATAAGTCTATTCTAACTTAGCTATATGTTATAATTTGGTTTATTATAACACAATTTCAAACGAGCACTAGCTTCAGACAAATTCCGACAAGTATAATACAAATACTTTGTAACTTTTTACTAAATTCTACAAGCCTATTGACCTCATACCTGACATGCAGAGAGCCTTATCAGACCAAAATACAACCAGTACTGAGATACTGAAAAAGAGACTCCTCATTATGGCAACAGACCCTGTAAATACATGAAGACATCTTGAATTATACATGAATATTGAGCATGTTTTAGATTTGAagattttatagtaatggtttggTTTGAGATACATGGTCGATtactttcaaagcaaaaaagttcactgtgtaaaacacaaaagtctATCTTACCGTATTCCAAAATTTCAACAGGGTAGTTAGAAGCCAGATTTGTCCTCGAACAGAACTACATCGGAAGACACATGAAtcaaaagcattaatatgtcCTAAAATCAATTGTTCTCTGCTTCGTCTTTAACCCAACAGGACAGCACAGCATGAACAGCCTTTAGTAAGTTAACTGAACTCCAACAAACCTTTCACTGAGCAAATAATAGTTGTTGAGATCAATCATATCAAGATTTAACAACATCCACTAGGTAACACAGTAAGACAATCAGTACTTAAGTTACAGTACTTAACTATCCCtcagtaattattaaaaatgtttacttacatttagaaaaaaaaaaataagaaaggaaCAGGAATGGAGAATGTCGTGTTTAGAGTGTGTTAATGACTAACCAACTCTGTTTACTAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14431 lncRNA upstream 45042 5724701 ~ 5725016 (+) True G9671
TU14420 lncRNA upstream 52652 5717178 ~ 5717406 (+) True G9663
TU14416 lncRNA upstream 64173 5702617 ~ 5705885 (+) True G9660
TU14417 lncRNA upstream 64173 5702617 ~ 5705885 (+) False G9660
XR_006252507.1 lncRNA upstream 162633 5604474 ~ 5607425 (+) True LOC122357632
TU14470 lncRNA downstream 1242 5832357 ~ 5832690 (+) True G9690
TU14472 lncRNA downstream 21154 5852269 ~ 5859952 (+) True G9692
TU14477 lncRNA downstream 310927 6142042 ~ 6142865 (+) True G9697
TU14570 lncRNA downstream 545028 6376143 ~ 6376597 (+) True G9758
TU14665 lncRNA downstream 671275 6502390 ~ 6502594 (+) True G9825
XM_043223281.1 mRNA upstream 6199 5730605 ~ 5763859 (+) False pex5lb
XM_043223272.1 mRNA upstream 6199 5730605 ~ 5763859 (+) False pex5lb
XM_043223261.1 mRNA upstream 6199 5730606 ~ 5763859 (+) True pex5lb
XM_043223290.1 mRNA upstream 6199 5730607 ~ 5763859 (+) False pex5lb
XM_043254486.1 mRNA upstream 858882 4909133 ~ 4911176 (+) True LOC122355892
XM_043262112.1 mRNA downstream 5533 5836648 ~ 5838633 (+) True LOC122361161
XM_043219558.1 mRNA downstream 404755 6235870 ~ 6239694 (+) True crfb16
XM_043255183.1 mRNA downstream 417933 6249048 ~ 6255573 (+) True mb21d2
XM_043217069.1 mRNA downstream 426436 6257551 ~ 6337572 (+) False fgf12a
XM_043217065.1 mRNA downstream 444901 6276016 ~ 6337572 (+) False fgf12a
TU14373 other upstream 160782 5608327 ~ 5609276 (+) True G9630
TU14284 other upstream 860260 4909129 ~ 4909798 (+) False LOC122355892
TU14282 other upstream 860260 4909136 ~ 4909798 (+) False LOC122355892
TU14280 other upstream 870772 4898398 ~ 4899286 (+) False LOC122361055
XR_006247003.1 other upstream 1181580 4579274 ~ 4588478 (+) True mylk4a
unassigned_transcript_185 other downstream 138535 5969650 ~ 5969724 (+) True trnag-gcc_1
unassigned_transcript_186 other downstream 140404 5971519 ~ 5971593 (+) True trnag-gcc_2
unassigned_transcript_187 other downstream 143600 5974715 ~ 5974786 (+) True trnag-gcc_3
unassigned_transcript_188 other downstream 146800 5977915 ~ 5977989 (+) True trnag-gcc_4
unassigned_transcript_189 other downstream 150048 5981163 ~ 5981233 (+) True trnag-gcc_5

Expression Profile