RNA id: XM_043219129.1


Basic Information

Item Value
RNA id XM_043219129.1
length 644
RNA type mRNA
GC content 0.45
exon number 2
gene id sst2
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 6367177 ~ 6367954 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATAAGCAAGAAGACACATTTAGGGAGCACAGTGCAGCTTAAAGGCTTGAATCAAGGTGAGACAAGCCACATCCTTTAAGACAGCAGTGATGGCCTCATCCCAACTTCACCTCACTGTATCCTTGTTCTGTTTGGCCATGACTGCCAGCATCATATCATGTGGCCGATCTCATATGGTTTTGAACTCTGCACTACAGGCATCTCATGGCACTCCTGCTGATGAAGAGATGCCAGAGAGATACTCCTTTCCAGAGCTTCAGTGGTTGCTCAGTAACTCAGACCCAACACTCATCCAGTCTGACAGTTCACCTCTGGGGGTTCTACAGAGTGGATTGGACCTAATGAGGAGGGAGAGTGGAGACAAAGAGGCTGCAAGAAAACCAGGCTGCAAGAACTACTTCTGGAAATCCAGAACGGCATGCTAACAACAGGCAACCCAACCAAAAGATCCCAGAGGCCCGGTCACAATCAACATGCTgccaattatatatttattcccTTTCCTGAATTCACACTTGTCATGTGACAGTCTTTGAAGTGAACCTCGGTAATTATAGCCATTATCTGTTAAGAGTGTTCCTCAATCTCTTGtctatgttgctctaaaacatTGACTGCTTGTAATAAACTGAATATAGCATTAA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14477 lncRNA upstream 224327 6142042 ~ 6142865 (+) True G9697
TU14472 lncRNA upstream 507240 5852269 ~ 5859952 (+) True G9692
TU14470 lncRNA upstream 534502 5832357 ~ 5832690 (+) True G9690
TU14425 lncRNA upstream 536077 5770058 ~ 5831115 (+) True G9667
TU14431 lncRNA upstream 642176 5724701 ~ 5725016 (+) True G9671
TU14570 lncRNA downstream 8189 6376143 ~ 6376597 (+) True G9758
TU14665 lncRNA downstream 134436 6502390 ~ 6502594 (+) True G9825
TU14667 lncRNA downstream 144210 6512164 ~ 6512394 (+) True G9827
TU14674 lncRNA downstream 154851 6522805 ~ 6523467 (+) True G9834
TU14676 lncRNA downstream 156166 6524120 ~ 6524421 (+) True G9836
XM_043217069.1 mRNA upstream 29620 6257551 ~ 6337572 (+) False fgf12a
XM_043217065.1 mRNA upstream 29620 6276016 ~ 6337572 (+) False fgf12a
XM_043217047.1 mRNA upstream 29620 6285922 ~ 6337572 (+) True fgf12a
XM_043217056.1 mRNA upstream 29620 6285922 ~ 6337572 (+) False fgf12a
XM_043255183.1 mRNA upstream 111619 6249048 ~ 6255573 (+) True mb21d2
XM_043218864.1 mRNA downstream 106068 6474022 ~ 6488700 (+) False slc35d1b
XM_043218854.1 mRNA downstream 106069 6474023 ~ 6488700 (+) False slc35d1b
XM_043218872.1 mRNA downstream 106155 6474109 ~ 6488700 (+) True slc35d1b
XM_043262122.1 mRNA downstream 472672 6840626 ~ 6842093 (+) True LOC122361319
XM_043260277.1 mRNA downstream 488290 6856244 ~ 6879649 (+) True bpnt2
unassigned_transcript_205 other upstream 144673 6222445 ~ 6222519 (+) True trnag-gcc_21
unassigned_transcript_204 other upstream 146692 6220426 ~ 6220500 (+) True trnag-gcc_20
unassigned_transcript_203 other upstream 253485 6113637 ~ 6113707 (+) True trnag-gcc_19
unassigned_transcript_202 other upstream 257545 6109573 ~ 6109647 (+) True trnag-gcc_18
unassigned_transcript_201 other upstream 289728 6077390 ~ 6077464 (+) True trnag-gcc_17
TU14734 other downstream 322418 6690372 ~ 6690779 (+) True G9887
TU14736 other downstream 323714 6691668 ~ 6692375 (+) True G9889
TU14783 other downstream 618344 6986298 ~ 6987119 (+) True G9925
TU15034 other downstream 1137637 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 1738911 8106865 ~ 8107777 (+) True G10212

Expression Profile