RNA id: TU14677



Basic Information


Item Value
RNA id TU14677
length 314
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G9837
representative True

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 6524782 ~ 6525095 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTGAATTGCAAGTGTCCCTAACACCTGATTAAACACCCCAGACATGAAATTTGTCCCTTGATCACTCTGAATAACCTTAGGAAGTCCGAATGTCGCAAGAAACTTCATAAGGGCTTTAATAATGGTAGATGCAGTGATCTTACGGAGCGGAATCGCTTCAGGAAAACGAGTTGTAGCACACATAACCGTTAGAAGAAACTGATTACCAGCCTTTGACCTTGGCAACGGCCCTACACAGTCAATGATTACTCTTTCAAACGGTTCTTGTACAATGGGTATTGGAGTAAGGGGAGCACTTGGGATTACCTGATTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU14676 lncRNA upstream 361 6524120 ~ 6524421 (+) True G9836
TU14674 lncRNA upstream 1315 6522805 ~ 6523467 (+) True G9834
TU14667 lncRNA upstream 12388 6512164 ~ 6512394 (+) True G9827
TU14665 lncRNA upstream 22188 6502390 ~ 6502594 (+) True G9825
TU14570 lncRNA upstream 148185 6376143 ~ 6376597 (+) True G9758
TU14678 lncRNA downstream 859 6525954 ~ 6526170 (+) True G9838
TU14679 lncRNA downstream 1996 6527091 ~ 6527303 (+) True G9839
TU14680 lncRNA downstream 2274 6527369 ~ 6527632 (+) True G9840
XR_006252542.1 lncRNA downstream 14194 6539289 ~ 6554930 (+) True LOC122357847
TU14689 lncRNA downstream 21135 6546230 ~ 6551351 (+) True G9847
XM_043218864.1 mRNA upstream 36082 6474022 ~ 6488700 (+) False slc35d1b
XM_043218854.1 mRNA upstream 36082 6474023 ~ 6488700 (+) False slc35d1b
XM_043218872.1 mRNA upstream 36082 6474109 ~ 6488700 (+) True slc35d1b
XM_043219129.1 mRNA upstream 156828 6367192 ~ 6367954 (+) False sst2
XM_043217056.1 mRNA upstream 187210 6285922 ~ 6337572 (+) False fgf12a
XM_043262122.1 mRNA downstream 315531 6840626 ~ 6842093 (+) True LOC122361319
XM_043260277.1 mRNA downstream 331149 6856244 ~ 6879649 (+) True bpnt2
XM_043260303.1 mRNA downstream 331156 6856251 ~ 6878523 (+) False bpnt2
XM_043260288.1 mRNA downstream 331159 6856254 ~ 6879649 (+) False bpnt2
XM_043260312.1 mRNA downstream 331168 6856263 ~ 6878523 (+) False bpnt2
TU14569 other upstream 156828 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 302263 6222445 ~ 6222519 (+) True trnag-gcc_21
unassigned_transcript_204 other upstream 304282 6220426 ~ 6220500 (+) True trnag-gcc_20
unassigned_transcript_203 other upstream 411075 6113637 ~ 6113707 (+) True trnag-gcc_19
unassigned_transcript_202 other upstream 415135 6109573 ~ 6109647 (+) True trnag-gcc_18
TU14734 other downstream 165277 6690372 ~ 6690779 (+) True G9887
TU14736 other downstream 166573 6691668 ~ 6692375 (+) True G9889
TU14783 other downstream 461203 6986298 ~ 6987119 (+) True G9925
TU15034 other downstream 980496 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 1581770 8106865 ~ 8107777 (+) True G10212

Expression Profile