RNA id: TU14678


Basic Information

Item Value
RNA id TU14678
length 217
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G9838
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 6525954 ~ 6526170 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCGAAGTATCTGGATTGGTCGCTGATCTGCAGGGTTACCGGTTGTggaaactaaccctttaaaaatgaacagatgATAACTTGCTTCAACATTCTTTTCAAAAGATAACTGTCCGCTTATGGGTGTAGACTGAATTAATCCTACAGTTGTGGGTCGGGCATGTTTACTTTTAAGAGCACGACAATCAGCAATCAAATGACCAACTTTATGGCAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14677 lncRNA upstream 859 6524782 ~ 6525095 (+) True G9837
TU14676 lncRNA upstream 1533 6524120 ~ 6524421 (+) True G9836
TU14674 lncRNA upstream 2487 6522805 ~ 6523467 (+) True G9834
TU14667 lncRNA upstream 13560 6512164 ~ 6512394 (+) True G9827
TU14665 lncRNA upstream 23360 6502390 ~ 6502594 (+) True G9825
TU14679 lncRNA downstream 921 6527091 ~ 6527303 (+) True G9839
TU14680 lncRNA downstream 1199 6527369 ~ 6527632 (+) True G9840
XR_006252542.1 lncRNA downstream 13119 6539289 ~ 6554930 (+) True LOC122357847
TU14689 lncRNA downstream 20060 6546230 ~ 6551351 (+) True G9847
TU14731 lncRNA downstream 123276 6649446 ~ 6649800 (+) True G9884
XM_043218864.1 mRNA upstream 37254 6474022 ~ 6488700 (+) False slc35d1b
XM_043218854.1 mRNA upstream 37254 6474023 ~ 6488700 (+) False slc35d1b
XM_043218872.1 mRNA upstream 37254 6474109 ~ 6488700 (+) True slc35d1b
XM_043219129.1 mRNA upstream 158000 6367192 ~ 6367954 (+) False sst2
XM_043217056.1 mRNA upstream 188382 6285922 ~ 6337572 (+) False fgf12a
XM_043262122.1 mRNA downstream 314456 6840626 ~ 6842093 (+) True LOC122361319
XM_043260277.1 mRNA downstream 330074 6856244 ~ 6879649 (+) True bpnt2
XM_043260303.1 mRNA downstream 330081 6856251 ~ 6878523 (+) False bpnt2
XM_043260288.1 mRNA downstream 330084 6856254 ~ 6879649 (+) False bpnt2
XM_043260312.1 mRNA downstream 330093 6856263 ~ 6878523 (+) False bpnt2
TU14569 other upstream 158000 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 303435 6222445 ~ 6222519 (+) True trnag-gcc_21
unassigned_transcript_204 other upstream 305454 6220426 ~ 6220500 (+) True trnag-gcc_20
unassigned_transcript_203 other upstream 412247 6113637 ~ 6113707 (+) True trnag-gcc_19
unassigned_transcript_202 other upstream 416307 6109573 ~ 6109647 (+) True trnag-gcc_18
TU14734 other downstream 164202 6690372 ~ 6690779 (+) True G9887
TU14736 other downstream 165498 6691668 ~ 6692375 (+) True G9889
TU14783 other downstream 460128 6986298 ~ 6987119 (+) True G9925
TU15034 other downstream 979421 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 1580695 8106865 ~ 8107777 (+) True G10212

Expression Profile