RNA id: TU14680


Basic Information

Item Value
RNA id TU14680
length 264
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G9840
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 6527369 ~ 6527632 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGACATTTATCAAATTCCCCAAGAGTCGGACTCCTAATAAATTAATCCAAATTAAACATGGCCACACTTAATACCAGGAAACGTACTGAACTAGAAACAAATTTGCCTTAAGCAATAGACAACGCCCCCTCTACAAACCCTATAACTAGCTCTACAAATGAAATCACTTTGTCAACCGTGTTGATCCCAACCAAACCAATGCCCACAAAGAAAAAACTCGGGACTTTTaatatcccggacgagcccccaaaaATGTTACGATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14679 lncRNA upstream 66 6527091 ~ 6527303 (+) True G9839
TU14678 lncRNA upstream 1199 6525954 ~ 6526170 (+) True G9838
TU14677 lncRNA upstream 2274 6524782 ~ 6525095 (+) True G9837
TU14676 lncRNA upstream 2948 6524120 ~ 6524421 (+) True G9836
TU14674 lncRNA upstream 3902 6522805 ~ 6523467 (+) True G9834
XR_006252542.1 lncRNA downstream 11657 6539289 ~ 6554930 (+) True LOC122357847
TU14689 lncRNA downstream 18598 6546230 ~ 6551351 (+) True G9847
TU14731 lncRNA downstream 121814 6649446 ~ 6649800 (+) True G9884
TU14737 lncRNA downstream 214101 6741733 ~ 6742173 (+) True G9890
TU14739 lncRNA downstream 228191 6755823 ~ 6756092 (+) True G9892
XM_043218864.1 mRNA upstream 38669 6474022 ~ 6488700 (+) False slc35d1b
XM_043218854.1 mRNA upstream 38669 6474023 ~ 6488700 (+) False slc35d1b
XM_043218872.1 mRNA upstream 38669 6474109 ~ 6488700 (+) True slc35d1b
XM_043219129.1 mRNA upstream 159415 6367192 ~ 6367954 (+) False sst2
XM_043217056.1 mRNA upstream 189797 6285922 ~ 6337572 (+) False fgf12a
XM_043262122.1 mRNA downstream 312994 6840626 ~ 6842093 (+) True LOC122361319
XM_043260277.1 mRNA downstream 328612 6856244 ~ 6879649 (+) True bpnt2
XM_043260303.1 mRNA downstream 328619 6856251 ~ 6878523 (+) False bpnt2
XM_043260288.1 mRNA downstream 328622 6856254 ~ 6879649 (+) False bpnt2
XM_043260312.1 mRNA downstream 328631 6856263 ~ 6878523 (+) False bpnt2
TU14569 other upstream 159415 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 304850 6222445 ~ 6222519 (+) True trnag-gcc_21
unassigned_transcript_204 other upstream 306869 6220426 ~ 6220500 (+) True trnag-gcc_20
unassigned_transcript_203 other upstream 413662 6113637 ~ 6113707 (+) True trnag-gcc_19
unassigned_transcript_202 other upstream 417722 6109573 ~ 6109647 (+) True trnag-gcc_18
TU14734 other downstream 162740 6690372 ~ 6690779 (+) True G9887
TU14736 other downstream 164036 6691668 ~ 6692375 (+) True G9889
TU14783 other downstream 458666 6986298 ~ 6987119 (+) True G9925
TU15034 other downstream 977959 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 1579233 8106865 ~ 8107777 (+) True G10212

Expression Profile