RNA id: TU14689


Basic Information

Item Value
RNA id TU14689
length 3818
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G9847
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 6546230 ~ 6551351 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTCATTTCTCGTTGTTTCTAGGGAGCAACTTTAAATCCACAACCACCTATAGGATCACAACACCAATCACAATTCCCTTCTTAAGGTCCCTTCTGTTATTAGCAGTCATTGCTTCACTCAGAATCTAATCATCCACCTCCATCCCTAGCTCCTCATATTTGGTTGAGTATGAAAAAATGTAGAAGAATAGAAGAGGAGGTGTGTCTACCATCTGATAATATGCCAAATGGAGTGCCCCAAAGTTGAGTGCATGCACTTCAAAAACCAGATAAGAAGTGCGATTGTGTTACATAGACACTACAAAGACTTGTCTCAATGTGAAGTGCTGCACAGAGGAACGACGCAAGCTGTCCCAATTCAGGATGCACCCTCCAAAAAGTGTGCAACAAAGCCCGTCACGACTTCAAACACGCCCTCCGTTTCCCATGAAAATTAATTGTACATCTGATGGACATTTTGTACTCAACCATAGCCCAGAATCACTTGTGCAGATGATCACGGTGTTTACATTCAAAGAACACAGCGATGAGAATTCCCTGTCTCTCAGTCATTATGAGTTTAGTcgtgacgacagactggggtcttgcttggagcccttattAGCTCTGATAATAGAAAACGTCAATGAtatttggcaagtggttaactaacCCTGAGCCCCTCCACATCACGTGTGTATAAATAGGCTACAGGTGTAACCACTCATCAGATTTTGCTTCGGAGACGACAGTTTGCATGACTACCAGCCCTGAAGTGCTACAAACAGAGGAAAAGCTGAAAACATAAGTGGGTCTTCAGTGTCTGGGGCTTCAGCACGATGAAGATGCGATCAGGGCCCTCATTGTGAGGCCATGCCCATGACAGTACTGCGATCCCGCCTTTCTATCCTTCAGGAGGGACTGTTCCCCGCTGCACACTCCTTGATAAGCCGATGACTCTGATGGTGCCATTTGTGAAGAGTCTGGATGTGCGGTTAGCACTACCCAATCCTTCAAGACTATTCGGCTCGGCTATGTGATTCAATACACCCAGCGTCCTCCCAGGTACAGTGGCGTTCTAGAAACTTCTGTGGCAGCCCAGAATGCTCCTCCTGGCAAAGGATGCAATCGAGCCAGTCCCTCCAGCTGAGATGAAAGCAGGTTTCTACAGCCCCTACTTCATTGtacccaagaaaggcggtggccTTTGAGTTCTGAATTGGGCCCAGCACAATATTTCGTTCAGAATGCTTATGCAGAAATGCATCAATAAATGTGTACAACATCGGGATTGCTTTGCAGCAATCGACTTGAAGGATGCGTATTTTCATGTCTCCATCCTTCCTCGCCACAGACTGTTTCTACGGTTTGCATTCGAAAATCGAGCATGGCAGTATAAAGTCCTCCCCTTCGGCCTCTCCCTGTCTAAGCAAGGCCTTCACGAAGGTCACGGAGAGCGCTCTTGCCTCCTATGGGAAATGGGCGTCAGACTCCTCAGTTATCTTGAATTATCTATGATTAGCTAATTCTAGCTCAGTCCATAGTCCCATGATGGGCATGGCACAGTGGGTCACTCTGCAAGACGATCCCACTGGCTTATCGTCACACTTTCAGCCTATGGATAGACCTTGCATTTCTACAGGCCGGGGTGTCCTTAGAACAAGTGTCGCGGCATGTGGTAGAAACCACAGATGCCTCCATGACAGGTTGGTGCGCTGTCACAGTTCAATCGTGCAGCTCTCACAACAACTCTGCCTCCCCGGAGAATGGCTACTTCACCCTGAGATGATCCAGCTGATTTGGAATCGATATGGAGAGGCTCTGGTCGACCTGTTTACTTTTCGCGAATCCTCCGCCAGCTGTTTTACTCCCTAACCGAGGCTCCCCTCGGCACGGACGAGCTGGCACACAGATGGCCTCGGGCCCTACGCAAATATGCgttttccccagtgagcctgaTCGCACatacactgtgcaaggtcagggaggacgaGGAACAGGTCCTGCTGGTTGTGCCGTATCAGCCCACCCAGACCTAGTTTTCCGAACTCAATCTCCTCAATCTTCTCCTTGGCACCATGTGGCAACCGTGTCCAGACCTGTGGAACCTCCATGTTAGGCTCCTGGACGGGACGCGGCAGACTTAAGTGATTTACCACGGGCTGCGGTGAACACTATTATTCAGGctagagctccctctacgaggcAAGCCTATTCTTTGAATTGGAGCCTGTTCGCAAACTGGTGTTCTTCTTGCAGGGAAGACCCCTGGAAATGCAAGATTGGAGTAGTGCTTTTCTTCCTGCAAGAAGGGTTGGAGTGTAAGCTGTCACCCTCCACCCTAAAAGTGCATCCACCCTCCACCCCATCACGATGCAGCCGATGGCCGGACTTTGGGGAAGCACAGTCTCGTCGTCAGGTTTCTGAGGGGTGCCAGAAGGTTAAATCCTCCTAGGACACCCCTTGTGCCCTTATGGGATCTCTTAATTGTCCTGGCTTGCCTCCAGAGAGGTCCCTTTGAGCCGCTCGAGTCAGTCAAGCTGAGGTTTTTGTCTGTTAAGACAGCGCTCCTGATCACACTCACTTCCATCAAGAGGACCTCCAAGCATTTTCGGCAAGTGAAAAGTGCCTTGTGTTCTGGCCTGCCTACTCTCATGTAGTCCTGAGACCCGGCCTGGATACGTACCTACCACGCATTTTCGCGATCAGTTGGTGAACCTGCAAGCACTGCCCACAGAGGAAGCAGATCCAGCTATGGTCCAACCAGATCCTGGGTGAACCGTGCCCCCTAGGACTGAGAGCTCATTCTACTCAAAGTGTTGCCTCCTCCTTTGCGTTAGCGCATGGTGCCACCCTGGCAGACATTTGCAAAGCTGCAGGCTGGGCAACACTGAATACCTTTACGAGGTGCTACAGTCTTTGTGTAGAGCCAGTCTCTTCCCATGTGTTGGGTAATAGGTAATCGGAGGGAAGAACTGGCTGATGTCACAATTGCTGCACCATTAACCCTCACTTGGGGACGTGAACGCTGGTTTTTCACCTTCAGTAAGTTCACCGGATGGTGAACCCTTGTGGGGCTTCCTCCAACATCCCCGTCAGCAGTCTGACGACAGGCCCAGTATTGGCGCTTGCCTGAATCCGGTCATCCCCTGTACTGGGCTAGGTGCTCCATATAGCTTATTCTCCACAGAGATCCCATATGTGTATTATCCACGGCAAGGTACCCTCTTGTGAACCTTTGTCTTCCCTTGACAGAgtcctctgtctgtctctgctgccaGTACTTTCCTCTCCGTCCTGAGATAGGACCAGCCACAGAGATAGGACCAGCCACAGAGATAAGTTGTATGCTTACTGCCCCCTTCTGTGGTCAGTACTAGTTTGTCACCCCTCCCTTGGTCAGGATGTGGTCTCTGTAGCGTTCTTACAGAAAGTTTGCTTCCCCATTGTTAATAAATAGAAGAGATTCGCACCCTCTTGGAAGGTTGAAATCCCTTTCGTTAGAATTTTCTAAACTCAGGAACAGCGGGTTGGCTTCTCCAGTAGTCATGTACTGACGTCTGGTCCCCAGTGGGCACCAAGATCAGTGTATTGCTCTGGGGCGATGGGATGGTTACAACCTTTGCATGGCATTAATCTGGCATGTGCTGCTTACCAACTGTTGCAGTGCGATCAGGTAGTAACGAATTCAGGTTGTGACATAActcatagtgactgacagacagggaacgtctcggttacatatgtaaccctcCTTCCCTAATGGAGGAAAAGGAGACGTTATGTCCCCTTGCCGCAACCTCGAACCATCGTTGAGAGCTGAGACTCGGTTTCGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14680 lncRNA upstream 18598 6527369 ~ 6527632 (+) True G9840
TU14679 lncRNA upstream 18927 6527091 ~ 6527303 (+) True G9839
TU14678 lncRNA upstream 20060 6525954 ~ 6526170 (+) True G9838
TU14677 lncRNA upstream 21135 6524782 ~ 6525095 (+) True G9837
TU14676 lncRNA upstream 21809 6524120 ~ 6524421 (+) True G9836
TU14731 lncRNA downstream 98095 6649446 ~ 6649800 (+) True G9884
TU14737 lncRNA downstream 190382 6741733 ~ 6742173 (+) True G9890
TU14739 lncRNA downstream 204472 6755823 ~ 6756092 (+) True G9892
TU14740 lncRNA downstream 277096 6828447 ~ 6829096 (+) True G9893
TU14749 lncRNA downstream 290800 6842151 ~ 6842425 (+) True G9901
XM_043218864.1 mRNA upstream 57530 6474022 ~ 6488700 (+) False slc35d1b
XM_043218854.1 mRNA upstream 57530 6474023 ~ 6488700 (+) False slc35d1b
XM_043218872.1 mRNA upstream 57530 6474109 ~ 6488700 (+) True slc35d1b
XM_043219129.1 mRNA upstream 178276 6367192 ~ 6367954 (+) False sst2
XM_043217056.1 mRNA upstream 208658 6285922 ~ 6337572 (+) False fgf12a
XM_043262122.1 mRNA downstream 289275 6840626 ~ 6842093 (+) True LOC122361319
XM_043260277.1 mRNA downstream 304893 6856244 ~ 6879649 (+) True bpnt2
XM_043260303.1 mRNA downstream 304900 6856251 ~ 6878523 (+) False bpnt2
XM_043260288.1 mRNA downstream 304903 6856254 ~ 6879649 (+) False bpnt2
XM_043260312.1 mRNA downstream 304912 6856263 ~ 6878523 (+) False bpnt2
TU14569 other upstream 178276 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 323711 6222445 ~ 6222519 (+) True trnag-gcc_21
unassigned_transcript_204 other upstream 325730 6220426 ~ 6220500 (+) True trnag-gcc_20
unassigned_transcript_203 other upstream 432523 6113637 ~ 6113707 (+) True trnag-gcc_19
unassigned_transcript_202 other upstream 436583 6109573 ~ 6109647 (+) True trnag-gcc_18
TU14734 other downstream 139021 6690372 ~ 6690779 (+) True G9887
TU14736 other downstream 140317 6691668 ~ 6692375 (+) True G9889
TU14783 other downstream 434947 6986298 ~ 6987119 (+) True G9925
TU15034 other downstream 954240 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 1555514 8106865 ~ 8107777 (+) True G10212

Expression Profile