RNA id: TU14734


Basic Information

Item Value
RNA id TU14734
length 408
RNA type TUCP
GC content 0.62
exon number 1
gene id G9887
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 6690372 ~ 6690779 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cttgcatgcacactatggcggtgttgcaggcataccaagccgacctgctgaaagagattgatgagggagagggggtcaggtccgatgacatcgcagaactgcgtcggacggctgacctctgcctccgcgtcactaaggagaccgcccgtgctgtagggcggtctatgtcatcccttgtggccgcggagaggcatctctggctgaccctgtccgacatgaaagagcgggacagggtctgcctattggacgcccccctgcagccttctggcctattcggcgactccgttaatgaggtcgtcgataggtaccaggaggcccgtaaacaggcggcggcgttcaagagtttcctcccacgtcgatctcagggggcatcgggacgagagatgcccccaccgcgtgccagctcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14731 lncRNA upstream 40572 6649446 ~ 6649800 (+) True G9884
XR_006252542.1 lncRNA upstream 135442 6539289 ~ 6554930 (+) True LOC122357847
TU14689 lncRNA upstream 139021 6546230 ~ 6551351 (+) True G9847
TU14680 lncRNA upstream 162740 6527369 ~ 6527632 (+) True G9840
TU14679 lncRNA upstream 163069 6527091 ~ 6527303 (+) True G9839
TU14737 lncRNA downstream 50954 6741733 ~ 6742173 (+) True G9890
TU14739 lncRNA downstream 65044 6755823 ~ 6756092 (+) True G9892
TU14740 lncRNA downstream 137668 6828447 ~ 6829096 (+) True G9893
TU14749 lncRNA downstream 151372 6842151 ~ 6842425 (+) True G9901
TU14775 lncRNA downstream 235190 6925969 ~ 6926177 (+) True G9918
XM_043218864.1 mRNA upstream 201672 6474022 ~ 6488700 (+) False slc35d1b
XM_043218854.1 mRNA upstream 201672 6474023 ~ 6488700 (+) False slc35d1b
XM_043218872.1 mRNA upstream 201672 6474109 ~ 6488700 (+) True slc35d1b
XM_043219129.1 mRNA upstream 322418 6367192 ~ 6367954 (+) False sst2
XM_043217069.1 mRNA upstream 352800 6257551 ~ 6337572 (+) False fgf12a
XM_043262122.1 mRNA downstream 149847 6840626 ~ 6842093 (+) True LOC122361319
XM_043260277.1 mRNA downstream 165465 6856244 ~ 6879649 (+) True bpnt2
XM_043260303.1 mRNA downstream 165472 6856251 ~ 6878523 (+) False bpnt2
XM_043260288.1 mRNA downstream 165475 6856254 ~ 6879649 (+) False bpnt2
XM_043260312.1 mRNA downstream 165484 6856263 ~ 6878523 (+) False bpnt2
TU14569 other upstream 322418 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 467853 6222445 ~ 6222519 (+) True trnag-gcc_21
unassigned_transcript_204 other upstream 469872 6220426 ~ 6220500 (+) True trnag-gcc_20
unassigned_transcript_203 other upstream 576665 6113637 ~ 6113707 (+) True trnag-gcc_19
unassigned_transcript_202 other upstream 580725 6109573 ~ 6109647 (+) True trnag-gcc_18
TU14736 other downstream 889 6691668 ~ 6692375 (+) True G9889
TU14783 other downstream 295519 6986298 ~ 6987119 (+) True G9925
TU15034 other downstream 814812 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 1416086 8106865 ~ 8107777 (+) True G10212
XR_006252402.1 other downstream 2471832 9162611 ~ 9171915 (+) False olfm3b

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU418097 True 348 lncRNA 0.64 1 NC_047618.1 10309285 ~ 10309632 (-)