RNA id: TU14749


Basic Information

Item Value
RNA id TU14749
length 275
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G9901
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 6842151 ~ 6842425 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACCAAGTCAACCTTTTGATCATATAATGTTCGAtttcattgaactgacaccaTGTGAAGGTAAGAAATTCTGCCTTGTTTTGGTTGATATGTTCTCAAAGTGGGTGGAAGTCTTCCCCACATCTAAGCAAAATGCTGGGGCTGTTGCAAAGGCACTAGTGTCTGAGATCGTCCCAAGATGGGGAATACCAAAAAAGATTAGTAGTGATAATGGCACACCTTTTGCTAATGAGGCAATCGATCAGGTTGGGAAATTCTTGGGAATCGACATACGT

Function

GO:

id name namespace
GO:0021514 ventral spinal cord interneuron differentiation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14740 lncRNA upstream 13055 6828447 ~ 6829096 (+) True G9893
TU14739 lncRNA upstream 86059 6755823 ~ 6756092 (+) True G9892
TU14737 lncRNA upstream 99978 6741733 ~ 6742173 (+) True G9890
TU14731 lncRNA upstream 192351 6649446 ~ 6649800 (+) True G9884
XR_006252542.1 lncRNA upstream 287221 6539289 ~ 6554930 (+) True LOC122357847
TU14775 lncRNA downstream 83544 6925969 ~ 6926177 (+) True G9918
TU14790 lncRNA downstream 158635 7001060 ~ 7001479 (+) True G9928
TU14792 lncRNA downstream 166935 7009360 ~ 7010594 (+) True G9930
XR_006247246.1 lncRNA downstream 193631 7036056 ~ 7036460 (+) True LOC122324999
TU14802 lncRNA downstream 193696 7036121 ~ 7036498 (+) False LOC122324999
XM_043262122.1 mRNA upstream 58 6840626 ~ 6842093 (+) True LOC122361319
XM_043218864.1 mRNA upstream 353451 6474022 ~ 6488700 (+) False slc35d1b
XM_043218854.1 mRNA upstream 353451 6474023 ~ 6488700 (+) False slc35d1b
XM_043218872.1 mRNA upstream 353451 6474109 ~ 6488700 (+) True slc35d1b
XM_043219129.1 mRNA upstream 474197 6367192 ~ 6367954 (+) False sst2
XM_043260277.1 mRNA downstream 13819 6856244 ~ 6879649 (+) True bpnt2
XM_043260303.1 mRNA downstream 13826 6856251 ~ 6878523 (+) False bpnt2
XM_043260288.1 mRNA downstream 13829 6856254 ~ 6879649 (+) False bpnt2
XM_043260312.1 mRNA downstream 13838 6856263 ~ 6878523 (+) False bpnt2
XM_043260296.1 mRNA downstream 14260 6856685 ~ 6879649 (+) False bpnt2
TU14736 other upstream 149776 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 151372 6690372 ~ 6690779 (+) True G9887
TU14569 other upstream 474197 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 619632 6222445 ~ 6222519 (+) True trnag-gcc_21
unassigned_transcript_204 other upstream 621651 6220426 ~ 6220500 (+) True trnag-gcc_20
TU14783 other downstream 143873 6986298 ~ 6987119 (+) True G9925
TU15034 other downstream 663166 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 1264440 8106865 ~ 8107777 (+) True G10212
XR_006252402.1 other downstream 2320186 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 2904169 9746594 ~ 9751212 (+) True arpc5a

Expression Profile