RNA id: TU14790


Basic Information

Item Value
RNA id TU14790
length 420
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G9928
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7001060 ~ 7001479 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCCACCCTGGTGGCTCCTGCTCTGTCTGCTCTACCCTAGTGGGTTCCAGCTACATCTACTCTGCCATGGTGGTCTTCTTCTCTGCCCTCGAGGTCTGATGTGCTGACTGCTCCACTAGGGTGGTCTTCTGGTCTTCTGGTTCCTGAGTTTCTGCCATTGCACTGTCACACCACCATCTGATCCCCCTGAAACCCATTACTGTTTCCACCTGCTCCCAattactacacacacatataagtcATATAAGTTTCCCTGTATCTTACCTTATTCATATCTGACCTTGGATTGTGTAATTTGACTCCCTGACCTGTTTGCCTATATATTGACTCTGCCTTTGCCTAGCCTCTACTGTTCCTGTTTGCCATTGATTGACCCTGCCTGTTTCACTATTGCAAATAAAGCTGCAAATGGATTTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14775 lncRNA upstream 74883 6925969 ~ 6926177 (+) True G9918
TU14749 lncRNA upstream 158635 6842151 ~ 6842425 (+) True G9901
TU14740 lncRNA upstream 171964 6828447 ~ 6829096 (+) True G9893
TU14739 lncRNA upstream 244968 6755823 ~ 6756092 (+) True G9892
TU14737 lncRNA upstream 258887 6741733 ~ 6742173 (+) True G9890
TU14792 lncRNA downstream 7881 7009360 ~ 7010594 (+) True G9930
XR_006247246.1 lncRNA downstream 34577 7036056 ~ 7036460 (+) True LOC122324999
TU14802 lncRNA downstream 34642 7036121 ~ 7036498 (+) False LOC122324999
XR_006247410.1 lncRNA downstream 41352 7042831 ~ 7043088 (+) True LOC122325829
TU14808 lncRNA downstream 49246 7050725 ~ 7050994 (+) True G9940
XM_043256234.1 mRNA upstream 27889 6970493 ~ 6973171 (+) False penka
XM_043256227.1 mRNA upstream 27889 6970494 ~ 6973171 (+) True penka
XM_043260277.1 mRNA upstream 121411 6856244 ~ 6879649 (+) True bpnt2
XM_043258773.1 mRNA downstream 82655 7084134 ~ 7098176 (+) True cryz
XM_043258792.1 mRNA downstream 82655 7084134 ~ 7098176 (+) False cryz
XM_043258783.1 mRNA downstream 82750 7084229 ~ 7098176 (+) False cryz
XM_043258735.1 mRNA downstream 96824 7098303 ~ 7105792 (+) True lrrc53
XM_043258743.1 mRNA downstream 98703 7100182 ~ 7105792 (+) False lrrc53
TU14783 other upstream 13941 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 308685 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 310281 6690372 ~ 6690779 (+) True G9887
TU14569 other upstream 633106 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 778541 6222445 ~ 6222519 (+) True trnag-gcc_21
TU15034 other downstream 504112 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 1105386 8106865 ~ 8107777 (+) True G10212
XR_006252402.1 other downstream 2161132 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 2745115 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 2910149 9911628 ~ 9916861 (+) True znf414

Expression Profile