RNA id: TU14792



Basic Information


Item Value
RNA id TU14792
length 1123
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G9930
representative True

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7009360 ~ 7010594 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGTACCTTGAACATATGATGATTCAATGTTTGTAACTgaatttaaacagcatttaataatcAGTTTAGATTATTGGTCAATTAGAATATTTTCCTagaaaaacagcaaacattCTACAAGTTTTTCCAGCCCCATCTATACATCACAAAATAACTCAAACCTCTGACGATTCAATGCAAAGTTTCCAAGCAGAATCAATATTAAAGCCAAACAAAAGCTTTCATTTGATCAATGCTAGCAACAAATTTTATTGGCTTTTCTTCATCTTCCAAATGTAAATTTagaacaaatcaaaaataaaataagtttgtcaactaaatcaaaaaCTAAGAACTCCATGGTACGCATATTAAAACAAAGTGCTCAATCACAtacaagaaataaattaaatgaaatttattccatcactatatagataatatatatttatatattaaacaaaaacttcagGCTTTTTTCCcacaattaagactttaaacATCACAAGACATATCCTTCAGTAAGTGCCCATGAAAGAAAGTAGCATGGGTCTTGTTCAATAGTCAGTAAGAATCAAGATTTTCTCATGCTGTCCTCTGGACTCTGACCTGACCATGTGGCAGCAGTGGACATCTTAGGCGTGGCTGATGGGCAGCTGTGTCAATGAGTGGGGCAAGAGAGGCTGCAGAACCAGTGAAGAGGGAGAGTGGACTACAAAGATGAAAAGTTAATGTCTAGTCTCAAAACTTCAGTCATGGAGAGctcatatacatacacaatttttttttgtttttttacataagacTTAATTTAGTATGAAAAACTACTCAAAACTCACATAGAATATTGCGATATTCCACATAACATACCATCCATATAGGAGTGTAGTGCAGTCAGCATAGGGGTGTCTACAGGGGCAAAAGCAGTGTACTGAAATTCATCTATTAGGGGAGGAGAAAGCCGAGTGGACTGCAGAGATGACACTGGTGCAGCTGAAGAGTGATTTGGGCTAACATGCTTCTTATGACGAGCTCGACAGTTCTGAAACCAAACCTGATAACCCTCCGGCTTAGACCAGTTCTTTCTGCCAACTTTTGTAAAGTCTGAGCATCTGGATTGTTGTCCTGAGCAAACTGGGCTTGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU14790 lncRNA upstream 7881 7001060 ~ 7001479 (+) True G9928
TU14775 lncRNA upstream 83183 6925969 ~ 6926177 (+) True G9918
TU14749 lncRNA upstream 166935 6842151 ~ 6842425 (+) True G9901
TU14740 lncRNA upstream 180264 6828447 ~ 6829096 (+) True G9893
TU14739 lncRNA upstream 253268 6755823 ~ 6756092 (+) True G9892
XR_006247246.1 lncRNA downstream 25462 7036056 ~ 7036460 (+) True LOC122324999
TU14802 lncRNA downstream 25527 7036121 ~ 7036498 (+) False LOC122324999
XR_006247410.1 lncRNA downstream 32237 7042831 ~ 7043088 (+) True LOC122325829
TU14808 lncRNA downstream 40131 7050725 ~ 7050994 (+) True G9940
TU14819 lncRNA downstream 89034 7099628 ~ 7100661 (+) False lrrc53
XM_043256234.1 mRNA upstream 36189 6970493 ~ 6973171 (+) False penka
XM_043256227.1 mRNA upstream 36189 6970494 ~ 6973171 (+) True penka
XM_043260288.1 mRNA upstream 129711 6856254 ~ 6879649 (+) False bpnt2
XM_043258773.1 mRNA downstream 73540 7084134 ~ 7098176 (+) True cryz
XM_043258792.1 mRNA downstream 73540 7084134 ~ 7098176 (+) False cryz
XM_043258783.1 mRNA downstream 73635 7084229 ~ 7098176 (+) False cryz
XM_043258735.1 mRNA downstream 87709 7098303 ~ 7105792 (+) True lrrc53
XM_043258743.1 mRNA downstream 89588 7100182 ~ 7105792 (+) False lrrc53
TU14783 other upstream 22241 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 316985 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 318581 6690372 ~ 6690779 (+) True G9887
TU14569 other upstream 641406 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 786841 6222445 ~ 6222519 (+) True trnag-gcc_21
TU15034 other downstream 494997 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 1096271 8106865 ~ 8107777 (+) True G10212
XR_006252402.1 other downstream 2152017 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 2736000 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 2901034 9911628 ~ 9916861 (+) True znf414

Expression Profile