RNA id: XM_043258743.1


Basic Information

Item Value
RNA id XM_043258743.1
length 2847
RNA type mRNA
GC content 0.42
exon number 6
gene id lrrc53
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7098303 ~ 7105792 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCCACAGGAGGAATCGGGTGAAAgatcatgcatgttttataacTTTACCTTCCTCATCTGTCTTGCAGTCAGCATCTCCTGGCAACAGAGGTCACATGAGTGCAGCATCAGGGGAATTTATATAATTGTTGTTGCAAAGCAGATCCAAGGCCATGGACCACTTAAGCCATTTTTGGAAGTCAAACACTATCTGACATCAGTGTCAAATCATGAGAAGTGTCTGCCTGCTACTGATGGTGATCTCTCAAGTTCAGCGGTCGTTACTCTGCCCTTCTTCTTGTGtggtgtgttctgaagatgTCATCATCTGTCATAAACTGTTAAACATTATTGATGCACCAGGCTCTACTAAAGCTTTGATGCTCACCGATGGGTTCATTGATTCTGTGGACAACATGGTTCTCTCTGAATTATCCAACATGAATGTTCTGGCACTCAGCAACAACGCCATTTCTAGCATCATGGAGAATGCCTTTCAAAACCTCTCTTTTCTAACAACGCTGTTGCTGGACCATAACCGCATCTCCAGCCAATCCCTGGACAGCTCCACATTTTCCTGGCTTCACAGATTGGAGACTCTCCAGCTTAGTAACAACAATTTGAATGACATTGATGGCTCCTGGTTCCAAAGCTCTCAAACTTTAAAGACACTTCAGCTAGAGGGAAACGTCATCAACTACTTGAACTCCACAACCTTTGCCCATGCTGATCTAAGGAACCTGGAAACGCTGGACTTGTCTAACAACCTCATTGTGTACTTAGGACGTGATAGCTTCAGAAGGCTTCCTCGTCTCCACACGCTCGATCTGTCCCGTAATCATCTACACAGTGCTCCGGATGCCTTCTCGTATCTGTCATGGCTTTCATTGCTGAACCTTGATTTGAACCTCTGGAATTGTACATGCGAGATGAGAGAGCTGGCCTCATTTCTCAACAGTTACATTCAGGCTCCTGAAAAAGTATTGTCCAATGGGCAGAGGATGATTTGTGTGAATACAGATAATGCAGCTGTGCAAACTGTGCTGGAATTGACTGACACTAACTGTGTCCCACCAAACAGGAATATAACAGTGGCTAAAAGATATAAACCTTCTGAGCAATATATTAGAAATGTTGCTATTGccattgtattttcatttttggGTGGTATTGGGATCACCCTGGGAATAATTGCCATTGCATACCAAAAACTCAGTAAGAAATTTGAACTGGTGCAGGAGAAAAACAGAGATGGGGAGTCTGGCCTGGAATCAACTCAGTTGAATTTCTGTGAAGCCAAGGACACTCTAACTAAGTGCCATGCACTGTACAACAGCAACTACAAATCTCATCAGCCCTGGGACAGAGAAGACTCTTCTTATCTGGGATCGCACATGCTGGATAGTCATTTCACCTGTCACAAGTGCAGCTCTACAGCACAAGCAGTAGGAAAGCACAAAAGAGAAATAGTCCTGCAGAAAGCAACTCATGTAGGTGAACAGCTGGCTAATCGCCAACATGAATTGAATGATCAACATTCTGTGTTACAACAGAGGATCAAAGAGATAATTGGACAAAGACACAATGAGAGCGGAACAGGCCTTCCAAACAGCTATCTGAGCAGTCAGAGTACTTCTTCCCAACATCGTGGGGGTTCAAACGACATCTCAGCTGTCAGAATACAGCAGCTGGCCCTCAGTAATCATTTCTCAGCCCTCCAGAGAGGCGCATTCAGACCCCCAGACCAAATCCACAATGAAATAACTGAAGGAAATCACTCACTGTTAAAGCACAAGGCTGAAGACGTTGGTGAACAACCGATTTGCCAAACCATCAGCTGTCTGCACTGTCATCAGACTTATGAATACAGACAAGCTGGAAGTAATAACCAGAACATGTTTACAACTCACTCACAGAACACAGTTCAAAACGGAGCAGAATTGTACAATGCCATGCTATACAAAGACAACTTAGGTTATGACAAGTCAAACACTGGGAGACATGGTGCAAGTCAAGATACTAAGTTGGGTTTTAAGTTAGATCCTCAAAGAAGTGTTACTTTTGATCTAGCTGGGACAGAGGAACATGTCCTCACCTTAATGGCTGATAGATACAAAAAGGAAAGCCGGATGAAGAACTTTAAAACATCTGCACAGAAAACCACACGAAAGACTAAAAGCAACACACAAGGACACTTAAATGCCCAGAAAACTAGAGGACAGGCAAAGAGGACACtgaaagttaaattaaatttaaacccCCTTCGAAAAAGCAGAGTTCATCCAAAGTCCATTGACAAAGGAGATATTGAAAAAGACAAGATGTACAAAAAgagtaagaaagaaaaactgaaaagcaaaaaggacaaaaaagatcaacttaaaatgaatagaaCTAGTGAAAAATCTAAAGATAACATTGAATGTTCAGGAAGTGAGGAAGAGAAAAATGATACTATGCAAGATTTCTCTAAAAAGAAGCATACTAAAAAAGGAAACAAGGAATCAAAGTCCCTGTCTAAGGATACAGATGATGTTACTACAGAAAAAggtcaaaattatatttctgttcAGGGAGAAACCGAAATGGCATCAACACTCCCACTAGCGGTCGGTTTAGCTCTTCCAAATGATCACAGCAGTCTTACAGATCCAAATATTGCACTTCCTGTGGGTGAATCCACAGCTCCACAGGATGTATTGGATCAGTCCAGCAGTTCAGACCTGATTAGCTCTGGTGCACCTGTCATCCAAGAATATGTATCTTCAGCTGAGGGTTCACCAAAGAGGAAGTTAAGACTCATTTTACCTGAAAAAACCAACAGGCCACAAACAGCACTTGATAAGAAAATCAGATAATGTTATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14808 lncRNA upstream 49188 7050725 ~ 7050994 (+) True G9940
XR_006247410.1 lncRNA upstream 57094 7042831 ~ 7043088 (+) True LOC122325829
TU14802 lncRNA upstream 63684 7036121 ~ 7036498 (+) False LOC122324999
XR_006247246.1 lncRNA upstream 63722 7036056 ~ 7036460 (+) True LOC122324999
TU14792 lncRNA upstream 89588 7009360 ~ 7010594 (+) True G9930
TU14902 lncRNA downstream 83863 7189655 ~ 7196400 (+) True G10012
TU14903 lncRNA downstream 91298 7197090 ~ 7199537 (+) True G10013
TU14910 lncRNA downstream 100715 7206507 ~ 7209934 (+) True G10020
TU14911 lncRNA downstream 104946 7210738 ~ 7210938 (+) True G10021
TU14967 lncRNA downstream 179886 7285678 ~ 7300079 (+) False gng12a
XM_043258773.1 mRNA upstream 2006 7084134 ~ 7098176 (+) True cryz
XM_043258792.1 mRNA upstream 2006 7084134 ~ 7098176 (+) False cryz
XM_043258783.1 mRNA upstream 2006 7084229 ~ 7098176 (+) False cryz
XM_043256234.1 mRNA upstream 127011 6970493 ~ 6973171 (+) False penka
XM_043258755.1 mRNA downstream 419 7106211 ~ 7111272 (+) True fam151a
XM_043262341.1 mRNA downstream 20479 7126271 ~ 7151771 (+) True ssbp3a
XM_043262347.1 mRNA downstream 20479 7126271 ~ 7151771 (+) False ssbp3a
XM_043262354.1 mRNA downstream 20479 7126271 ~ 7151771 (+) False ssbp3a
XM_043262363.1 mRNA downstream 20479 7126271 ~ 7151771 (+) False ssbp3a
TU14783 other upstream 113063 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 407807 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 409403 6690372 ~ 6690779 (+) True G9887
TU14569 other upstream 732228 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 877663 6222445 ~ 6222519 (+) True trnag-gcc_21
TU15034 other downstream 399799 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 1001073 8106865 ~ 8107777 (+) True G10212
XR_006252402.1 other downstream 2056819 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 2640802 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 2805836 9911628 ~ 9916861 (+) True znf414

Expression Profile