RNA id: TU14903


Basic Information

Item Value
RNA id TU14903
length 2369
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G10013
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7197090 ~ 7199537 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACTGGCTGTGTTAAAGCAGATAAAAGCcgctatttctttcttttctatttccCCCCTTTCGGCGGCAAAATAAAGACGACGAcgacgacaacaacaacaaaacaaatactgtaaGGCTTCGTCCTCTGTATCACGCAGCACGACTGAAGCGAAACGGATTGCTCGAGTCACACAGCGCTGCGGCCTTGATGTGCGTCGTGTCTTCAGCGGCTCGTGAGGATCAGCGCGCGCACCACTGGGGCGTTCTAGCGAGGCTACTAGCGCGGTTTAATTCCCACACTTTAACGGTATTTATAGCTTCTGAGAAAGAATTATCTCGACCTGCAGATCTGTATGCAAGCGAGAACGAGAGGGCCCTTTATTGGTTTATTGGAGAGACACGAATTTTAATCTAGGATGGAGGATTTCGTTTTTCACGCGTCAGTGATTGTCCCCGTGCACGCGTGCAAATGCAAGAGCGTCAcaggttattatatatttttacaataccatgcatattttatattttaaatgcacttaactttaaaattatagtgcatttaaatattaaaccgtTTCTTAAAACCAGTCCAACGAGTAAGCGAACAGAACTAAGCGATCTTTGCTCTTCTATCCTTCATATTGCAGTGCATACAGTTATAAAGCAGCAGATATTATCAGCTGGGGGTTTTAACCTCTGTCTGCAGCTTCATCAGTTTGTGGCGGCTCTCTTTAAGAGCGGCTTGAGCGAGCGCTTCCTTCAGTCTTGTGCTTAACAGCTCCCCCTGGAGTCCATTTTGTGCATTGGTGACCTTTTGCTGACCTCCACAATGCACCTGCTGCTTCTAGCAGACAGACAGTGAGGTTTTGATAACCCGCTCTTACGGTATATTGAACAATGAATATCTTAAATTCTTTAACCCCGTGCAAAAGTTACCTGCCACTTCTCGTCCAGGTCTTTAATGTGCTGTTTTAGCACTTTGAGTTCAGTGAGTGCCTCCGATTCCTGCAATCTACAGCCGATCAGCTCCGTCTGCAGATACATCACACTGTCCCCATTAGCCACATCGCTTTTCTACAACACAGACACGCACGCATTTTTAATTACGGAAGCAACCTCAAACCCGGCTAAACATAAGTGTGTGATGTCTAACATGCTTTAACTCACTATAGCCTATGAATACACTAAGGATGGTctatttttgtaggccaaagGGTTAGCATTTGAGTGCTCCGGTTCTATCGTTCTGAAGTGAATCgtgctttaaaacaaatattctgGCTTAAATCAATTAtagctgtgtttatttgtgaagACTATCTTGATTAACAAAATGTGTACGATTCGTAGATTTTTACTAGTCacaaagtttatttttcaaGCCAAaggaaaagtctttttttttgcaaccggAGTTGGCCAACAAAATTAGGTCATCACTGCAGCACTCTAAAACTGTGCTTAATACTTCACAttaatgtgtgtaaaacaaGTTTGCATGGACGATTTAACTTAATTTCGACCTCTTCCATCTGCAAGATGTTTGCCTGCATCTCTTTTAAAGCGCTTTGTGACCTGGCTGTGTTTAGCTGAGTTTTCTCCAGCTCTTTCTTTAGCTGTGACACCAGTTTTTCTGAGCACCTCTGGATAGTCGGCACCTTTTCCAGTAAGGCAAGCCtctgctttaaatgtttgttctCTGAGGAAAGTCCCTTGAGATAAGGCAAGAGAACAAGTTTAAAATGGCTTTGGTTTTATTTAGAATCTGAAGGCTGTTGAGAAAtattatatggaaaaaaaacaagcactcACATTTAGTTCTTCCTGCTCCTGCTGCTTTTTCGTCTTGATAGATGCATACTCTTGTCTCAACCTAAAACCAATAAAACGAATCATATTGTTTGCATAGACAATTGgataaaacaatacaatgcaaaaaaacacatactgtTTCATTCTGCTGggattgtattttatttgatatgcTACTTCAATGATTCCGTCAGGATCTGAAGCCCATGATTCTAGATTCTGCAAGCACTGAACACAACAGAATTAAAAGTGGCAGTATTTCAAAGACGTAAtgattgtaaaaagaaaaatcctaGCAAGTGGTAAAGAATAATTCACTGAGGTGTTCCATTACGTTCGTCATTCCCTCTACGTCAAGCTTGATGAGTTCTGTCTGCTTCATGTGAAGTAAAGCCAAACCAACCCGGAACACAATCTCCAAACCCTAAAGCGCATGTGCATAacgtacataaaataaaactattaaaaggttttctgtaattaaaaaataaaatgaatgataaaataCCATATGAGAAACGTGAATTTAAATAAGGAAACATAAACCTAAACGTtgatagaaataaatagaagtaa

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function

KEGG:

id description
ko04978 Mineral absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14902 lncRNA upstream 690 7189655 ~ 7196400 (+) True G10012
TU14819 lncRNA upstream 96429 7099628 ~ 7100661 (+) False lrrc53
TU14808 lncRNA upstream 146096 7050725 ~ 7050994 (+) True G9940
XR_006247410.1 lncRNA upstream 154002 7042831 ~ 7043088 (+) True LOC122325829
TU14802 lncRNA upstream 160592 7036121 ~ 7036498 (+) False LOC122324999
TU14910 lncRNA downstream 6970 7206507 ~ 7209934 (+) True G10020
TU14911 lncRNA downstream 11201 7210738 ~ 7210938 (+) True G10021
TU14967 lncRNA downstream 86141 7285678 ~ 7300079 (+) False gng12a
TU15018 lncRNA downstream 220905 7420442 ~ 7421878 (+) True G10094
TU15044 lncRNA downstream 282093 7481630 ~ 7555541 (+) True G10112
XM_043221692.1 mRNA upstream 12076 7176935 ~ 7185014 (+) True rpap2
XM_043221740.1 mRNA upstream 26975 7164705 ~ 7170115 (+) False cdc7
XM_043221812.1 mRNA downstream 3764 7203301 ~ 7206402 (+) True rpl5a
XM_043224143.1 mRNA downstream 25553 7225090 ~ 7236113 (+) True mtf2
XM_043223526.1 mRNA downstream 37402 7236939 ~ 7254571 (+) True ccdc18
XM_043223534.1 mRNA downstream 37402 7236939 ~ 7254571 (+) False ccdc18
XM_043223539.1 mRNA downstream 37816 7237353 ~ 7254571 (+) False ccdc18
TU14783 other upstream 209971 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 504715 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 506311 6690372 ~ 6690779 (+) True G9887
TU14569 other upstream 829136 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 974571 6222445 ~ 6222519 (+) True trnag-gcc_21
TU15034 other downstream 306054 7505591 ~ 7582385 (+) False G10108
TU15202 other downstream 907328 8106865 ~ 8107777 (+) True G10212
XR_006252402.1 other downstream 1963074 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 2547057 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 2712091 9911628 ~ 9916861 (+) True znf414

Expression Profile