RNA id: TU15039


Basic Information

Item Value
RNA id TU15039
length 1684
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G10108
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7504622 ~ 7582385 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAATTACTGAACTTTATTACATTGAGTTTTTTcctgcaacattttttattccagttttcTTAttaacaaatagaaaacagactGTGTATACAACAGATCGAACCTCTACAGCACTAATCATTCACAAGGTAAAAATGAACTTGCCAACATGTTCTGAACGTATGGCCGGGTCTCCCTTTAACATGCCGGTTGTAATCAAGCAGGCATGAAATGACGTCCTGTAGGAATTGTTTTACTTTGACTTGTGCTGCCTCACCCCACCAGAGGAGACCGCCAAATGCCTGGGGGTGCGTGGATAATACAGTAGATATAACTTTTGTACCATGAATAGATTCACACACAGCAGTCTCTCGTGTAATTTTCTCTATGTTGGTATATCAAGAAGAGTCCAGGATATAACGTTTTGAGAGAATTATGGACAATAGAGCTGAAGCTGTTTATACACTGTATctataatagtatttatatttattcataattataaatttatgtatatatatatatatatatatatatttctgtataaaaaGAAGAGTTGGATTAAACAGAGCTGACTCTCCCTTTGGGGGAGTGGTTTATACTGTACAGGTGCCAATGGCGATTGGTCTCATTTCAATATCAGGTCTTCAGTTGTCACTGAGAAGCGGGACGCTTTTCGTTAGGATTGCTTTCAGTTGCCGGTAAGGTCCCTCACGCGCTCTCATCAGAAGGTCGCACCTAACCCCTACCGAGTTCTGTACAGTGCCCATTTTATTAGTTAGCTGATTTACTTTCTTCTACAAAAGGCTTTTCTTAATTTAGTACCACTAACCCAAATGCATATGTCTCGCAGTtggagatttttcttttatcattgAGATAGACAAAGAACATTACAGGCTTCTCCAAAAGTGAACCCGCTCATTGTAGCCCAATAAGACCAATTCTACGTATTgaaggaaacaaaaacaaaaaaaacgaaaaaagaaACGGTAAAATCATGTTACAAAGTCAAACCATCAGCAGCTTAGAGAACAGCGATTCTCTCGTATTAGTATCAGGaacatgttaaaaatacatgttcTTGTGCTAAAATAACCTATTatgaagaaaatcaaaaataaaacagtaccAATTATGGAAAAGGTAGACCCGCGGAAAAGGCCATTAAGACAAGAGAtgattaaacacaaatattctacataagaataataacaatattgtcgtactggattttttaaaataattacaaatgataACCATGATTtatgctttttcaaaaaaaaaaaaaaaaaaaaaaaaaaatgaaagagcaaaacagaaaagaaagaaacaagaagaaTTAGTGCTACCAGTAGCCTTCGACTGTAGTGTGGGTTGGCGTATGCTAAAGAGAAACtagaatatagtttttttaagatGGTGCTTCTTGAAAGAGAGTTGTCTATATTTCTTAAAGCAATCTCTTGGTGCCAGTCAATAACGGACTGCTGTGATTGGTTAACCAGCCACTGGATAGCCTGCCTTTCCCACCCCAGATCTCTGTACAGGATGGGGATGGGAGCGGTGGCTCAGAAGGAACACTTGGTGCACTCCTGAAGAGTTGTACCAGAGGGCTGTGGTCCAGGAGTGGTTACGTTGCATAGTGATCAAAGCTCCCCAGGTACTCCAAAGCGGCTCTGTAGCACAGCTGGTACTGGTCct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15018 lncRNA upstream 82744 7420442 ~ 7421878 (+) True G10094
TU14967 lncRNA upstream 204543 7285678 ~ 7300079 (+) False gng12a
TU14911 lncRNA upstream 293684 7210738 ~ 7210938 (+) True G10021
TU14910 lncRNA upstream 294688 7206507 ~ 7209934 (+) True G10020
TU14903 lncRNA upstream 305085 7197090 ~ 7199537 (+) True G10013
TU15089 lncRNA downstream 29023 7611268 ~ 7612187 (+) True G10145
TU15064 lncRNA downstream 31104 7613349 ~ 7615136 (+) True G10127
TU15156 lncRNA downstream 203233 7785478 ~ 7785832 (+) True G10179
TU15160 lncRNA downstream 292238 7874483 ~ 7882477 (+) True G10183
TU15166 lncRNA downstream 373548 7955793 ~ 7956206 (+) True G10188
XM_043256906.1 mRNA upstream 113587 7388418 ~ 7391035 (+) True ptger4c
XM_043256194.1 mRNA upstream 157967 7340271 ~ 7346655 (+) False dmbx1a
XM_043256186.1 mRNA upstream 157967 7340271 ~ 7346655 (+) True dmbx1a
XM_043216752.1 mRNA upstream 204521 7285670 ~ 7300101 (+) True gng12a
XM_043218822.1 mRNA downstream 732886 8315131 ~ 8318467 (+) True glula
XM_043263850.1 mRNA downstream 790993 8373238 ~ 8382443 (+) False elovl1a
XM_043263841.1 mRNA downstream 795047 8377292 ~ 8382443 (+) True elovl1a
XM_043263798.1 mRNA downstream 804632 8386877 ~ 8403214 (+) True cc2d1b
XM_043263812.1 mRNA downstream 804632 8386877 ~ 8403214 (+) False cc2d1b
TU14783 other upstream 517503 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 812247 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 813843 6690372 ~ 6690779 (+) True G9887
TU14569 other upstream 1136668 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 1282103 6222445 ~ 6222519 (+) True trnag-gcc_21
TU15202 other downstream 524620 8106865 ~ 8107777 (+) True G10212
XR_006252402.1 other downstream 1580366 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 2164349 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 2329383 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other downstream 2329383 9911628 ~ 9915491 (+) False znf414

Expression Profile