RNA id: TU15065


Basic Information

Item Value
RNA id TU15065
length 477
lncRNA type inter_gene
GC content 0.59
exon number 3
gene id G10127
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7567310 ~ 7670458 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aggcaaggcaaGTGGTGTCTGGTCGAAGCCCTTGGATGGTCATCTGAGTGTCGGAGGTGCGATTGGTGCCGTTCTGTATGTTGTTGATGTCGCGGTACATCACTAGGTATTGCGTGATTCGGCCGTTGCACTCAGACAGGGCCGGGGGGTCCCAGGCAAGGCGGGTGGTGGAGGTGGTCAGGCCCACGACGCGTAGGTTAAGGGGAAACCCACTTGGCACGTCCTCCGGGGTGCTGATCTCTTTTATATACTCCTCTCCGGCTCCAGCGCGGTTCCTGGCGCTCAGGTGGAAGGTGTAGGTGGCGCCCTTGTGTAGTTCTGTGGCGGTGTGGTGGTCGTCAGTGCGTGCGAACTCACGCACTTCGTAGTTCTCCTCCTCCACGCGCTTGTACCGCAGTCGGTAGCCAATCAGCTCACCCACCATGTCCTTAGGAGGCTGCCATTGGATGAGGGCTGTGTTGCCAATCagttcaccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15044 lncRNA upstream 11769 7481630 ~ 7555541 (+) True G10112
TU15018 lncRNA upstream 145432 7420442 ~ 7421878 (+) True G10094
TU14967 lncRNA upstream 267231 7285678 ~ 7300079 (+) False gng12a
TU14911 lncRNA upstream 356372 7210738 ~ 7210938 (+) True G10021
TU14910 lncRNA upstream 357376 7206507 ~ 7209934 (+) True G10020
TU15156 lncRNA downstream 115020 7785478 ~ 7785832 (+) True G10179
TU15160 lncRNA downstream 204025 7874483 ~ 7882477 (+) True G10183
TU15166 lncRNA downstream 285335 7955793 ~ 7956206 (+) True G10188
XR_006247501.1 lncRNA downstream 357292 8027750 ~ 8031107 (+) True LOC122326720
TU15180 lncRNA downstream 411359 8081817 ~ 8090536 (+) False G10198
XM_043256906.1 mRNA upstream 176275 7388418 ~ 7391035 (+) True ptger4c
XM_043256194.1 mRNA upstream 220655 7340271 ~ 7346655 (+) False dmbx1a
XM_043256186.1 mRNA upstream 220655 7340271 ~ 7346655 (+) True dmbx1a
XM_043216752.1 mRNA upstream 267209 7285670 ~ 7300101 (+) True gng12a
XM_043218822.1 mRNA downstream 644673 8315131 ~ 8318467 (+) True glula
XM_043263850.1 mRNA downstream 702780 8373238 ~ 8382443 (+) False elovl1a
XM_043263841.1 mRNA downstream 706834 8377292 ~ 8382443 (+) True elovl1a
XM_043263798.1 mRNA downstream 716419 8386877 ~ 8403214 (+) True cc2d1b
XM_043263812.1 mRNA downstream 716419 8386877 ~ 8403214 (+) False cc2d1b
TU14783 other upstream 580191 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 874935 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 876531 6690372 ~ 6690779 (+) True G9887
TU14569 other upstream 1199356 6367177 ~ 6367954 (+) True sst2
unassigned_transcript_205 other upstream 1344791 6222445 ~ 6222519 (+) True trnag-gcc_21
TU15202 other downstream 436407 8106865 ~ 8107777 (+) True G10212
XR_006252402.1 other downstream 1492153 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 2076136 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 2241170 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other downstream 2241170 9911628 ~ 9915491 (+) False znf414

Expression Profile