RNA id: TU15180


Basic Information

Item Value
RNA id TU15180
length 511
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G10198
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 8081817 ~ 8090536 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCAGCACCAGGTTCAATAAACTAATGCCTAAGAGATGGTGTATTAAAAAGGCCCCTCTGATGTCAGTGGCCgtggaaacagaaaaaactggcctcttcactctcctgagcagcaaacaaatgaaaaccagTGTACCTGGATTCCTTTTTGAACTGTGATACGATCGCGGAAACTCCCTGGTAGGCCTCCTGCAGATCCTCGTACTGCGCCGTCCCCGGTGGCCGATGTGGGTCACACTCCAACGCAGCCAGAGGAACCCCAGACCTCGCGGTGATCTGGAGCGCTATCTGGTTTCCTTCGGGACAATTACACGACGAAACGTCCAAAATCTCAGTCCTTCTGTCCTCGTTTGAAAgttattaacaaaaacacactttaaacacCGTCTGTCTCAGCACTCAAAACGAGTGGAATGACGTGACCGCCGTAACGGAAAAAACGAACATGGAACATACGaacataaacaacacaataaagtaaataacttgTGTATACACACGCACTATATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247501.1 lncRNA upstream 50710 8027750 ~ 8031107 (+) True LOC122326720
TU15166 lncRNA upstream 125611 7955793 ~ 7956206 (+) True G10188
TU15160 lncRNA upstream 199340 7874483 ~ 7882477 (+) True G10183
TU15156 lncRNA upstream 295985 7785478 ~ 7785832 (+) True G10179
TU15064 lncRNA upstream 466681 7613349 ~ 7615136 (+) True G10127
TU15209 lncRNA downstream 128729 8219265 ~ 8262830 (+) True G10219
TU15220 lncRNA downstream 431866 8522402 ~ 8528707 (+) False G10226
TU15223 lncRNA downstream 431866 8522402 ~ 8528707 (+) False G10226
TU15224 lncRNA downstream 431866 8522402 ~ 8528707 (+) False G10226
TU15228 lncRNA downstream 431866 8522402 ~ 8528707 (+) True G10226
XM_043256906.1 mRNA upstream 690782 7388418 ~ 7391035 (+) True ptger4c
XM_043256194.1 mRNA upstream 735162 7340271 ~ 7346655 (+) False dmbx1a
XM_043256186.1 mRNA upstream 735162 7340271 ~ 7346655 (+) True dmbx1a
XM_043216752.1 mRNA upstream 781716 7285670 ~ 7300101 (+) True gng12a
XM_043218822.1 mRNA downstream 224595 8315131 ~ 8318467 (+) True glula
XM_043263850.1 mRNA downstream 282702 8373238 ~ 8382443 (+) False elovl1a
XM_043263841.1 mRNA downstream 286756 8377292 ~ 8382443 (+) True elovl1a
XM_043263798.1 mRNA downstream 296341 8386877 ~ 8403214 (+) True cc2d1b
XM_043263812.1 mRNA downstream 296341 8386877 ~ 8403214 (+) False cc2d1b
TU15034 other upstream 499432 7505591 ~ 7582385 (+) False G10108
TU14783 other upstream 1094698 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 1389442 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 1391038 6690372 ~ 6690779 (+) True G9887
TU14569 other upstream 1713863 6367177 ~ 6367954 (+) True sst2
TU15202 other downstream 16329 8106865 ~ 8107777 (+) True G10212
XR_006252402.1 other downstream 1072075 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 1656058 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 1821092 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other downstream 1821092 9911628 ~ 9915491 (+) False znf414

Expression Profile