RNA id: TU15202


Basic Information

Item Value
RNA id TU15202
length 913
RNA type TUCP
GC content 0.46
exon number 1
gene id G10212
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 8106865 ~ 8107777 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

actggagggagttTTGGGGGATCCAGCAGCCCTAGGTGGGAAACCAGCTCACCcccagccgatgtgcagtggacggagctccactccgcgctctccttgCAGTCTGCTGGCTCCACCGTGgtgagctccgttgctggctcgcgcacctggtctgacgtactcggctcgggtcctgttacgctccacggctcggtcgctctctctggcgatgggtccgtggttacgctcgactccgcccccgtgtcagcggtgggctcaggctggggctcgaccatgcggtggagggatgagctgggctctggatcctgagtggggctggtgtcgttgtcctccagtGCAACAGTCCTCGAcgatttgcacgacaccagcacccactcgacgtacgcggcgatgctctctcgaggaccgctcccggacagctgcgcctgATTGGAAACGTTTAGTGCGCGGAAGTAGattccgcacagaaagctgtccgggtaacgagagtcgttggccaggTGGAGGAATAGCGCGGTatattcctcgagagagcaatccccctgctccagcaggaggatgaggaaattcgGGTCTTGGTACGGGgaatacatgaaaacaaaataaaagaaataatcgcCGCTAAACTTGTACTTTTGTacggtccgatcttctgtcacgggtgtgataggcacgagagcagacaaagactataaatgaaaataaacttattttaatccacttcagggatgaaataaacaatgtaCATACAGGCGGGCAGGCAGATAGAcggaacaaaatcacacgcatataaggacgagatcggacaaacggaactgaaaacacaggacttaaatacaccgggttaaatgactaaattaactacacagctgatgacaatgacaattaacgaactaaaggcagggcacacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15180 lncRNA upstream 16329 8081817 ~ 8090536 (+) False G10198
TU15177 lncRNA upstream 16329 8081946 ~ 8090536 (+) True G10198
TU15184 lncRNA upstream 17394 8083536 ~ 8089471 (+) False G10200
TU15183 lncRNA upstream 22834 8083536 ~ 8084031 (+) True G10200
XR_006247501.1 lncRNA upstream 75758 8027750 ~ 8031107 (+) True LOC122326720
TU15209 lncRNA downstream 111488 8219265 ~ 8262830 (+) True G10219
TU15220 lncRNA downstream 414625 8522402 ~ 8528707 (+) False G10226
TU15223 lncRNA downstream 414625 8522402 ~ 8528707 (+) False G10226
TU15224 lncRNA downstream 414625 8522402 ~ 8528707 (+) False G10226
TU15228 lncRNA downstream 414625 8522402 ~ 8528707 (+) True G10226
XM_043256906.1 mRNA upstream 715830 7388418 ~ 7391035 (+) True ptger4c
XM_043256194.1 mRNA upstream 760210 7340271 ~ 7346655 (+) False dmbx1a
XM_043256186.1 mRNA upstream 760210 7340271 ~ 7346655 (+) True dmbx1a
XM_043216752.1 mRNA upstream 806764 7285670 ~ 7300101 (+) True gng12a
XM_043218822.1 mRNA downstream 207354 8315131 ~ 8318467 (+) True glula
XM_043263850.1 mRNA downstream 265461 8373238 ~ 8382443 (+) False elovl1a
XM_043263841.1 mRNA downstream 269515 8377292 ~ 8382443 (+) True elovl1a
XM_043263798.1 mRNA downstream 279100 8386877 ~ 8403214 (+) True cc2d1b
XM_043263812.1 mRNA downstream 279100 8386877 ~ 8403214 (+) False cc2d1b
TU15034 other upstream 524480 7505591 ~ 7582385 (+) False G10108
TU14783 other upstream 1119746 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 1414490 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 1416086 6690372 ~ 6690779 (+) True G9887
TU14569 other upstream 1738911 6367177 ~ 6367954 (+) True sst2
XR_006252402.1 other downstream 1054834 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 1638817 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 1803851 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other downstream 1803851 9911628 ~ 9915491 (+) False znf414
TU16308 other downstream 2603353 10711130 ~ 10718194 (+) True G10979

Expression Profile