RNA id: TU15228


Basic Information

Item Value
RNA id TU15228
length 5748
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G10226
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 8522402 ~ 8528707 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGATTTTttggatttaatttttatttttgcctttgTGCCCAGATTTCTTTTTCGTTTCATAATGAtgttgtaatgtgtttttttaagacgTTGAGTAAGATAAAGGCTTTTGCAGGTAATCCAAAGTGTGGTGCTGTTTTTACAAATTGGAGAAATGCACATACCAAGGATGattcaagaaatatttaaaaaccaattgagaaaactgtaaaaatatttcatgacaTGAAACCCATATCTTGTACTAAGTAAACAGATGGGTGTTATACATAGTTAACAGATTGCAATCACAAAACTAAGCagataatgctgtttttttttaaatagacactGTGGTCCACTCTATTTCACTAAGTTCCACTCACTTTAAAATGTCTGGCCCTGCCACCGCCATGTGCCATATTTTCCAGGTTTTGgtcaatttacattaaattatatttcaaactgTTAAGAATTGAATAAATCCAAGTATTTTAAATCCAAAAATCAGCTGGTAAACATAGCAAgcattagaaaaataaaaagtagccCCTACAtctaattttaaaatctaagattatttgttattacatGCCATCGTATGTAATGCAgccttttttatgtaatgtgcgtgtattgttcattgttcaaaTATCCCCACAAGGAAAGTAAaacctgatatatatatatatatatatatatatatatattttttttttttttttttttttttttttttttttttttgactttgagaaaaaaagttttatttcatcCCCTGTTGTAATGAAAGAGAAACTTAATCACATCCATTTTGTTCCTGAATGTGAACAGTTTGACCGACAAGATATGAACCGACACTGCTGCTTAACATGAACATCACGTTTCCCTCATTCTGTTCAATTATCAGGAGAAATAGAGTGATTCAGAAATATAGATTCTTATTTTGGGAAACATGTCAGACAAAGCTCAAATAGCCCGAATTTGGTGTGTATCTCTGTTAGGAACTCCGTTTTACTCGCAACTGAGCGGTGTGCATGCCTTCACCAGATCTATAAAGACAAGCATTAGAATAAATCACTACCTTTTAGGTGgacaacatttttcaaactcaaaagcaatgaaacatttataacaaaatcTATTTGTTTTGGTCCAGACATTGCAGGAAACACATTATGTACCTGGTTCACCCTGGCCAGTAGCGTAGGTCCTCTCAATCATGTCGGTGTACTTTTTATCCAGGAATTCGCTCAGAGGTTTAGTAATCTCTTGAAGGCATTTTGTGGAATCAGAGAAAAGGAGGTTTCTTTCGCCCTCTGACTTGAAAAGTCCGTCTGAACTGGACTGGCCTGCTTCAGAACGTTCACCACATCGGTGCGTGCATCTTCTCGGGTGATCACAGCATGAGCTGGCACTGTGGCGAGGTTACATTTAACAAATTCATCGTGCTTAAATGTTTTGTCTGGCGATTCTGGACAGATCAGTTCGAAATCGCCTGACTTCAGTTCCTTGGCCCATTCTGGTCCTTTGCCTAAGCAGatgcagagaaagaaaacatttaaaaaacgtgACACGGTGAAAAGCGTGAAACTTCATCAATTAAAACAAACCGCACTAACCATCTGTGTAATCCCCAACAATAGTGTGCTTGATAAAAGCAACTTCACCAGTTTTTTCTGCAAGACACCTACAAGTGGATTGAGATCATATTCCGCTTCAGACTATGGGAGTCAGCGTACGAATCAAAACAGCGAATTTCCCTTTCAATTACAGTGTTTAGGAAACGGTCCGATACCTGAAAGCCCCATCATAGCCATAATACAATTCCGCAGAAGATGCTTTGCACTTGCTATCATCTCCCACCGCCTTCCCGCTGCCTTTACACAGTTCACACATGTTGGATTGAGGATCAGCGCCAGGAGCAcagcctttactgaagaaatcGTCTGAGAAAGTGAAGagaaaatgtgctgttttatgCAATTACAAGAGCTTTGTGTAATCGTCTgtagaaaaaaatctttaaccGAATATgagtgcatatttaataacacTCACATAGGGTGCATTTGTCTGTTTTGCCACATATGGCTGAATCTGGGACTTTCCAGCCAGCATTGCGGTTCAGGCCGGTGTGGCAGGACTTCCTCCCTCGCAGACTGCCCCAGGTTACACCTGAGCCCTTACGCACCACGGCCACGACGTAGTAACTTGAGGCCTCTGTGCACATCATAGAAGTTATTAAGCATAAAGGTCTGGTtagaacaataaatataaatataacgaTATCAGGGGCAAAGCAAATGATTCATAATGTTCTGTTATGAGCGTGCTCTGCAGTTTTGTTGTCTACCGGCTTATATATTCAAGCTCTTTAAAGCAGGGAGGgttttgattggctgtcaaCATTTTTATAGTTCATCAGGTGGAAAATATAGCATTAAAAAAGTGATTCCAAATATGTCTTTCCTTTGTGTCGTTATGGTCATATAGCTGTGGCTTGGACTGTTTATTAAACTCACAGAGGTTTGGAAAAAGTGAGTgaatggtgacagaatttttatttttgaaagaattatccctttaagtcaGAATTAACAGATTTTCATGGAAGATAGTGACCAgcgcttcacaaaagcaaaagtATATAATGCTTACCTCCACCAGCTGTACAGCTTTCTGCAAGGAAGAAGtacatatgattttatttaaattctgacaAGTGTGCCTTACGAGCTGATTTCTAAAATATGAGATAATGTTCATTCTTACGTTGATCATACTGCTCAACCATAACCGGAGCTAGACCGCATTTTCCAGCAATATATACCTGGCCACCATCAACTGCAATGGCATCTGCTTCTTTGCGCTTTTAAAGTGAAAGAGAAAATCATACAGAATATTGCCATACAAGTTGGATCGGCCTCAGGGCTCATCTATTTGACCCGACGATACCTTGATTTTTTGAATGCACTCGTCCACAGATGATGCCCTCTTGCACGCGATACGGGGAATCTGAGTGTTTAATTTGTCACACTTCTCTTGCTCTGCGTGGCTAATGGTACACCATTCAATTGGACGGTCTTGAGGCAAGGCTGGCGGGCTCCCACCTGATAAGAAATtatacatacaatatttttCATCACATAATATGCGGCATCAGCATAGTTCTAGAGCATTTTCTCAGTTTCAATGGATGCACAGTATGCGGTCGGTAtcacagttcacacaaaaaaggcttaaaaatgtacatgtatgtacatttagggataaattaattctaaatgaataaaacaaatgttatttaacGTACGGTTATTTGTGGCTTAAttgttgtaatgtttttcaAGGACACTGTAtacattcaaatgcatttttggcatAATTGGTTGTCACCTCTAAGGGCACGCATGGCGTCAAAGTAATCTTCTCCCAGGTAGAAGAAGGAGTCTGTTTTAGGGAGCTCCATCAGTGCATGTCCAGAGTCTAAGAACATCAGATCTTTACCCCCAAAAGCGGCAGAAGAGAAAAGATCTGAATCCTGTTGAACACAACAGTTGAATATTCAAAGCTGGCCTTTAACGTCTATTTAACATGTATTGAATGATTAAATATCTAGGTTTATTACTTCAGATAATCTTCAGTAGTAAAGTAGTCAATAATgacacaacatttatttgatctggCGTACCGGAATCTGTTTAAGGACTTTATAAATGCTCTGTGAATCCGCATCCTTGCGGCCAATGACAGCACGGTAAGGCTCTTTGCCGAGGTAGCATTCCTTGTACTCCTCAACGCTTTTCCTGCTGTCATCCATGCACAGCAGCTGGTAGTTCGGCCTCTCACTCGCTATGGCATCCCAACGAACAAAAGCAACTTGTCCATGACCAGCTTTCAAGCACCTGCAAAGAATGCATGAGTTATACTGTTGCATATATGTAGAGAAGACAATACTATACGAGAATGCGTTCGTGAATTCGTACTGTAAGGCTCCTTCATCACcgctgtatttttcattttgtgaacaGCTGCAGTCACCCTGGCAGGCTTGGCACAGGCTTGGGTATCTAGCTTTGGATATTCCAGGAACGCAGCTGCTTGAAAAGAACTGTGACACAGctggagaacacacacaaaaaaagtacagcTAAAACATGTTAACGTACTGTGAAAACTGCCATTGCATAGAACTCATCGCATGGCTACTCATCAAAAAATAATTCCTATCCTAACTTTGTATCACTAGCACTTCTCATGTTTACAGTCTCTTTATGATGAAATACtggaaatactttttttatggaAAAGTGCAACTCTTATGATTCAACTGCTATAGATAAATTACtagaagaacaacaaaaaaagtcctATTTGATAAATACCAGTTTGCAACATTAAACAGCATGTCATACTAAAACACAATCTTGCACATTCAAGTTAAAAATGGTCATGTCTgcgtttatattaaaaaataacgtGGAGGCAAAGTTGCCATGAATGATCAATATTGGAAAATATCAAACCATTAAATGTTTCAGAGAGACATCTTATAATAATGTACACAATAATAATCCAACCAGGCTTACCCTTTTCGAGAGTCATGTCATCAGGACCATCCCACATAATCTTCTTTTCTGCAACCAGTCTTCCTATAGGTATACTCCAGCCTTGTGGACTTTGGTAACAACTGTGGCACGAAGTCTTTCCTTTGAGATCACTGATGGTAAAGTCGGCGTCCTTCTTGACCACAGCCACAGCATAATAGCATTCTTGAGAAGAAGCGGAGAAGAAAGAAAGCGAAGAAAatcaaaaacagcacaaaccATCAACTTGTAAATTAAAAGCTATGTAAGTGATATATTGCCAAATGACCCTGCATCctctgatatattttatatgtaaaatggcattaatttaaaaagctgaATCAATTCCGGTCAACATTGTAGCTGAATGACCGAATGATCAAAAATAGAATTAATGTTCAAAAGATCAATATGCTAATAATAAGCATGCTAATTGGCTAttatagttaatagtaagaatttGTCTCTATACTAAAGAGTCATCAATACTTTCCATTTAATCGTTATATTAGCAgtaaaatatctgtaaaatacCAATCATTTGGTCTATAGGTTGTGATGAATAGGGAAAAGGTGTGCATCTTATTGAATATATTCTTGTCATCAACaccacaataaaataatataatatttactttctttAGATTTCTCTGCTATGAGGGGACGGAGATCGTATGGAAGCAGTCCAGCTTTGTAAATATGTTCTCCATCTACAGTTATAGCATCTGCATCGCCATCCTGTGAATCAAAGACAATTAAATacttcaacaaaacaaaacagcgtGTGTGATGTAAAGTAATAAGCACATTTTAGTACCTTGATGCTTGTCATGCATTCAGTAACAGAAGCCTTGATATAACACTCAAGCTCTGGTGATTTGGTGGCAAGGTGCTGGCATTTCAACAGCTCATTCTGAGACTTCACACAccatttgactttttgagcGCTGGCTGAGGGCAGTGCCACAActgcaaagaaaacaacacaGTAGTAATTAACAGTCCACGCGAGCGCAATGATTGAATAATAactgaaatgtcaaaaatacCAAACGCGCAATTACCAAGGCACCCCAGGAATGAGACGAGCAGGATGTTCATGTTAGGCCTTCACCAGGGATTTTTGGCAGGTGGAGACAAGGGAGAGGAGGCTTTTTATAGGAGCTCTGGAAGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15209 lncRNA upstream 259572 8219265 ~ 8262830 (+) True G10219
TU15180 lncRNA upstream 431866 8081817 ~ 8090536 (+) False G10198
TU15298 lncRNA downstream 31391 8560098 ~ 8561513 (+) True G10271
TU15319 lncRNA downstream 58670 8587377 ~ 8589074 (+) False G10284
TU15324 lncRNA downstream 59341 8588048 ~ 8589074 (+) True G10284
TU15317 lncRNA downstream 59788 8588495 ~ 8589074 (+) False G10284
XR_006252375.1 lncRNA downstream 234132 8762839 ~ 8765451 (+) True LOC122356731
XM_043216810.1 mRNA upstream 35498 8443177 ~ 8486904 (+) False clcn2a
XM_043258048.1 mRNA downstream 61534 8590241 ~ 8599595 (+) True atp1b3a
XM_043222148.1 mRNA downstream 101705 8630412 ~ 8651546 (+) True atr
XM_043253247.1 mRNA downstream 123210 8651917 ~ 8662323 (+) True amer3
XM_043262402.1 mRNA downstream 302113 8830820 ~ 8841734 (+) True LOC122361595
XM_043259139.1 mRNA downstream 319620 8848327 ~ 8877202 (+) False LOC122359011
TU15202 other upstream 414625 8106865 ~ 8107777 (+) True G10212
TU15034 other upstream 940017 7505591 ~ 7582385 (+) False G10108
TU14783 other upstream 1535283 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 1830027 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 1831623 6690372 ~ 6690779 (+) True G9887
XR_006252402.1 other downstream 633904 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 1217887 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 1382921 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other downstream 1382921 9911628 ~ 9915491 (+) False znf414
TU16308 other downstream 2182423 10711130 ~ 10718194 (+) True G10979

Expression Profile