RNA id: TU15541


Basic Information

Item Value
RNA id TU15541
length 1218
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G10433
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 8939969 ~ 8941186 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cttttattctttttcacacaaatgtacagagtttcgattaataaagagtaatttttgcacaagtacttgaagaatatcatgttatgacttcaaaacaataataatatgctgGTAGATTTTAAAGCTGATTTTGAATGTAAGCATTatacatatccagcttcatatctatgggttttcatagatggtAGGTTTGTACAGAAACATTCTTGAGAGACAAGGAGATCCAATTTGAACCCTATTGTTTGACAAAACgtttcaaatctgtgtaaaaggaagtagaaatggcacggttgcatcaacaaatgcctttttatatcaggtttgcatttgttaatattatcgggtagggttggatttggtgtagggcatgtgtccaacatgatagagcattagcttttagcaacagtccacggatatttgaattctgaaccactataatatgtacaaaatatgtATCTATATCAACAAAATCGAACCTGCTTTTTAGTGCCATTCAGcgaacatttctttttgaaaaatggTGTTGagcaaaaaagtgcacagaggtacatatttttatgagaccaggttgcgAGTGACAATGTTCAGCATACATTTGAGAAATTCAAATCTGATCGGggcatcatatttttaaaatacaatttaaccTTTTAAGACCCTGCATCCTCATATGAggagattacattttaaattttaaaatacaaagtcTGGATGTCGTGTACAGAGATCCCGAATGACTGGATGTTTCATCATGATCCCTCTCCTTGgtcttcaaaaatgtctgaaattaatttagtgacACTCTTGTGGAAAATGATCATGTTTTTTATCTGtcaattttttaattgtgtttcataaatcaacatctcaggaaaatgttatggggtttgaGATCAAAATGAGACTTTCTGTCACGAAGCATAACAAATGAATAGGGAAATAAATTCTGGTCAATTATTACTCCcattattacacttcttttttcaCTACATTGTgccccaaaaacacattaatatacaaattagATATAGTTTATAGGTTTTACAAAACCCTGTGTAGAAATCCTGTTTATGGCCAGTTACCACACATTTTGCAGAAAGGAAAATGATATACCAAATCATTGTGTTATAATGGAGTTGAGAATCAtctttataaagttatttttttttacatttttaaaatcgcCAATACACTTTTAAATCAGTTGCTTTTGTCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15539 lncRNA upstream 9896 8929504 ~ 8930073 (+) True G10431
TU15463 lncRNA upstream 59516 8879942 ~ 8880453 (+) True G10374
TU15453 lncRNA upstream 140973 8798591 ~ 8798996 (+) True G10371
XR_006252375.1 lncRNA upstream 174518 8762839 ~ 8765451 (+) True LOC122356731
TU15324 lncRNA upstream 350895 8588048 ~ 8589074 (+) True G10284
TU15556 lncRNA downstream 114537 9055723 ~ 9056245 (+) True G10445
TU15557 lncRNA downstream 115904 9057090 ~ 9057859 (+) True G10446
TU15580 lncRNA downstream 274319 9215505 ~ 9216664 (+) True G10466
TU15704 lncRNA downstream 513180 9454366 ~ 9454745 (+) True G10557
TU15718 lncRNA downstream 544991 9486177 ~ 9572793 (+) True G10571
XM_043217443.1 mRNA upstream 10659 8890773 ~ 8929310 (+) True vav3b
XM_043259112.1 mRNA upstream 62767 8851405 ~ 8877202 (+) False LOC122359011
XM_043224154.1 mRNA downstream 146508 9087694 ~ 9154434 (+) True col11a1b
XM_043256072.1 mRNA downstream 221425 9162611 ~ 9170967 (+) False olfm3b
XM_043256064.1 mRNA downstream 221425 9162611 ~ 9169785 (+) True olfm3b
XM_043254902.1 mRNA downstream 232667 9173853 ~ 9180307 (+) False tecrl2b
XM_043254892.1 mRNA downstream 233999 9175185 ~ 9180307 (+) False tecrl2b
TU15202 other upstream 832192 8106865 ~ 8107777 (+) True G10212
TU15034 other upstream 1357584 7505591 ~ 7582385 (+) False G10108
TU14783 other upstream 1952850 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 2247594 6691668 ~ 6692375 (+) True G9889
TU14734 other upstream 2249190 6690372 ~ 6690779 (+) True G9887
XR_006252402.1 other downstream 221425 9162611 ~ 9171915 (+) False olfm3b
TU15832 other downstream 805408 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 970442 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other downstream 970442 9911628 ~ 9915491 (+) False znf414
TU16308 other downstream 1769944 10711130 ~ 10718194 (+) True G10979

Expression Profile