RNA id: TU15580



Basic Information


Item Value
RNA id TU15580
length 661
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G10466
representative True

Chromosome Information


Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9215505 ~ 9216664 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTCAGCGTACTGTACCTGTGCAGATGGGTGATGAGGAACTGCAGGGTTTTGTAGTGGGCCGCTGGAAGCTGGCGAAGGAGGTCTCTGATTTTGAAGAGGACTCTTTTAAGCTCAATACTGAGGCACAGCTGCTCTCCTGGTAATTTCTCTTTGGTTGAGTCTGTCTCCTCCATGTTCTGAGTCTCTTTCGCCAGCCCAATGATATCGTTATAGTATCGATACAGAATCAATGGCTCTGGCAGCTGAAATCAGGTAAAGCTTGAGCACGTTGCTTATGTCATGTGGGTGGAGGTCAGAAAGCTCCACTAAGTCCTTTCCGTTCTCAAAGGCCTGGCATAGCTTTTCCACACGAGACTTCGCCCCATTCACCCGATAAATGCCCTTGAAATGAACCGAAAGTAGGCGTCACTCACAACATGACTCAcaaacattgaattaaacaaattCCTTTCAGCTGCATCTCGATTCTTCACCTTAATGTTCAGGGCACGACTCTCGATTTCTGAGGTGCATTTTTTGATGATGAAGGGGATGCCGTCAGGACTGTTCTTAGCTACTTGGGCGAAGTCAATCCCGAACAGGTGCAGCCTGCCCTGGAGCTTCTTATGACCACACTGAATGGCAAGAGTCTCCAGACATTTCTTATGACAGGCCAAAGAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU15557 lncRNA upstream 157646 9057090 ~ 9057859 (+) True G10446
TU15556 lncRNA upstream 159260 9055723 ~ 9056245 (+) True G10445
TU15541 lncRNA upstream 274319 8939969 ~ 8941186 (+) True G10433
TU15539 lncRNA upstream 285432 8929504 ~ 8930073 (+) True G10431
TU15463 lncRNA upstream 335052 8879942 ~ 8880453 (+) True G10374
TU15704 lncRNA downstream 237702 9454366 ~ 9454745 (+) True G10557
TU15718 lncRNA downstream 269513 9486177 ~ 9572793 (+) True G10571
TU15720 lncRNA downstream 269513 9486177 ~ 9510133 (+) False G10571
TU15733 lncRNA downstream 360507 9577171 ~ 9577406 (+) True G10581
TU15761 lncRNA downstream 385702 9602366 ~ 9603843 (+) True G10604
XM_043254902.1 mRNA upstream 35198 9173853 ~ 9180307 (+) False tecrl2b
XM_043254892.1 mRNA upstream 35198 9175185 ~ 9180307 (+) False tecrl2b
XM_043254885.1 mRNA upstream 35198 9175210 ~ 9180307 (+) True tecrl2b
XM_043256072.1 mRNA upstream 44538 9162611 ~ 9170967 (+) False olfm3b
XM_043256064.1 mRNA upstream 45720 9162611 ~ 9169785 (+) True olfm3b
XM_043221226.1 mRNA downstream 22968 9239632 ~ 9248291 (+) True abcd3b
XM_043223752.1 mRNA downstream 38721 9255385 ~ 9277476 (+) False si:dkey-10f21.4
XM_043223748.1 mRNA downstream 52091 9268755 ~ 9277476 (+) False si:dkey-10f21.4
XM_043223743.1 mRNA downstream 54762 9271426 ~ 9277476 (+) True si:dkey-10f21.4
XM_043219505.1 mRNA downstream 61099 9277763 ~ 9281294 (+) False LOC122324815
XR_006252402.1 other upstream 43590 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 1107728 8106865 ~ 8107777 (+) True G10212
TU15034 other upstream 1633120 7505591 ~ 7582385 (+) False G10108
TU14783 other upstream 2228386 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 2523130 6691668 ~ 6692375 (+) True G9889
TU15832 other downstream 529930 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 694964 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other downstream 694964 9911628 ~ 9915491 (+) False znf414
TU16308 other downstream 1494466 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 2023462 11240126 ~ 11256764 (+) False kcnh2a

Expression Profile