RNA id: TU15718


Basic Information

Item Value
RNA id TU15718
length 481
lncRNA type read_through
GC content 0.38
exon number 2
gene id G10571
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9486177 ~ 9572793 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtttagctataaacaaatttcgggaggagcacgcactgataattaacgcggctggcttctcgtttcctaatcacgcaattatccaaccagagcaagagaagcctactataaattcgcacaagcttcttacctcgatatctcgtttccgagcatccctccaccaccccaatctccattcctcctagttctactatCCCCTCTCGGGGggggggcactcagggatcgggtcggacaccgagtcctgtccgctttcacggacaagaggaaaaactctggactcggtagtccacctagttccgagccctctccctgacagctcgccaaacacgcttactttttaccgttactatgattaattatacgtaagtgcgaactcgtgaaatCTTATTCAGGTTAACTGAGAAGTCATTACCGTGAGGAATCTGGAGCTGGTCTGAATGCTGCCATTACAGGCTGACAAAAAGCGAGAATCATAACAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15704 lncRNA upstream 31432 9454366 ~ 9454745 (+) True G10557
TU15580 lncRNA upstream 269513 9215505 ~ 9216664 (+) True G10466
TU15557 lncRNA upstream 428318 9057090 ~ 9057859 (+) True G10446
TU15556 lncRNA upstream 429932 9055723 ~ 9056245 (+) True G10445
TU15541 lncRNA upstream 544991 8939969 ~ 8941186 (+) True G10433
TU15733 lncRNA downstream 4378 9577171 ~ 9577406 (+) True G10581
TU15761 lncRNA downstream 29573 9602366 ~ 9603843 (+) True G10604
TU15857 lncRNA downstream 252822 9825615 ~ 9826220 (+) True G10674
TU15953 lncRNA downstream 416350 9989143 ~ 10010746 (+) True G10738
TU15974 lncRNA downstream 419991 9992784 ~ 9993395 (+) True G10749
XM_043218021.1 mRNA upstream 152850 9321702 ~ 9333327 (+) True ptbp2b
XM_043218030.1 mRNA upstream 152850 9321702 ~ 9333327 (+) False ptbp2b
XM_043219524.1 mRNA upstream 200505 9281355 ~ 9285672 (+) True rwdd3
XM_043219534.1 mRNA upstream 200505 9281355 ~ 9285672 (+) False rwdd3
XM_043219513.1 mRNA upstream 204883 9278427 ~ 9281294 (+) True LOC122324815
XM_043260965.1 mRNA downstream 5262 9578055 ~ 9600236 (+) False agla
XM_043260956.1 mRNA downstream 5959 9578752 ~ 9600236 (+) True agla
XM_043260948.1 mRNA downstream 5959 9578752 ~ 9600236 (+) False agla
XM_043260979.1 mRNA downstream 31395 9604188 ~ 9606195 (+) True si:ch73-14h1.2
XM_043260989.1 mRNA downstream 31395 9604188 ~ 9606195 (+) False si:ch73-14h1.2
XR_006252402.1 other upstream 314262 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 1378400 8106865 ~ 8107777 (+) True G10212
TU15034 other upstream 1903792 7505591 ~ 7582385 (+) False G10108
TU14783 other upstream 2499058 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 2793802 6691668 ~ 6692375 (+) True G9889
TU15832 other downstream 173801 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 338835 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other downstream 338835 9911628 ~ 9915491 (+) False znf414
TU16308 other downstream 1138337 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 1667333 11240126 ~ 11256764 (+) False kcnh2a

Expression Profile