RNA id: TU15720


Basic Information

Item Value
RNA id TU15720
length 395
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G10571
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9486177 ~ 9572793 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtttagctataaacaaatttcgggaggagcacgcactgataattaacgcggctggcttctcgtttcctaatcacgcaattatccaaccagagcaagagaagcctactataaattcgcacaagcttcttacctcgatatctcgtttccgagcatccctccaccaccccaatctccattcctcctagttctactatCCCCTCTCGGGGggggggcactcagggatcgggtcggacaccgagtcctgtccgctttcacggacaagaggaaaaactctggactcggtagtccacctagttccgagccctctccctgacagctcgccaaacacgcttactttttaccgttactatgattaattatacgtaagtgcgaactcgtgaaataatatttaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15704 lncRNA upstream 31432 9454366 ~ 9454745 (+) True G10557
TU15580 lncRNA upstream 269513 9215505 ~ 9216664 (+) True G10466
TU15557 lncRNA upstream 428318 9057090 ~ 9057859 (+) True G10446
TU15556 lncRNA upstream 429932 9055723 ~ 9056245 (+) True G10445
TU15541 lncRNA upstream 544991 8939969 ~ 8941186 (+) True G10433
TU15733 lncRNA downstream 67038 9577171 ~ 9577406 (+) True G10581
TU15761 lncRNA downstream 92233 9602366 ~ 9603843 (+) True G10604
TU15857 lncRNA downstream 315482 9825615 ~ 9826220 (+) True G10674
TU15953 lncRNA downstream 479010 9989143 ~ 10010746 (+) True G10738
TU15974 lncRNA downstream 482651 9992784 ~ 9993395 (+) True G10749
XM_043218021.1 mRNA upstream 152850 9321702 ~ 9333327 (+) True ptbp2b
XM_043218030.1 mRNA upstream 152850 9321702 ~ 9333327 (+) False ptbp2b
XM_043219524.1 mRNA upstream 200505 9281355 ~ 9285672 (+) True rwdd3
XM_043219534.1 mRNA upstream 200505 9281355 ~ 9285672 (+) False rwdd3
XM_043219513.1 mRNA upstream 204883 9278427 ~ 9281294 (+) True LOC122324815
XM_043224544.1 mRNA downstream 12895 9523028 ~ 9539523 (+) True plppr4a
XM_043219866.1 mRNA downstream 44098 9554231 ~ 9562237 (+) True palmda
XM_043219859.1 mRNA downstream 44098 9554231 ~ 9559890 (+) False palmda
XM_043224901.1 mRNA downstream 53098 9563231 ~ 9570989 (+) False si:ch211-153l6.6
XM_043224910.1 mRNA downstream 53098 9563231 ~ 9570989 (+) False si:ch211-153l6.6
XR_006252402.1 other upstream 314262 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 1378400 8106865 ~ 8107777 (+) True G10212
TU15034 other upstream 1903792 7505591 ~ 7582385 (+) False G10108
TU14783 other upstream 2499058 6986298 ~ 6987119 (+) True G9925
TU14736 other upstream 2793802 6691668 ~ 6692375 (+) True G9889
TU15832 other downstream 236461 9746594 ~ 9751212 (+) True arpc5a
XR_006247735.1 other downstream 401495 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other downstream 401495 9911628 ~ 9915491 (+) False znf414
TU16308 other downstream 1200997 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 1729993 11240126 ~ 11256764 (+) False kcnh2a

Expression Profile