RNA id: TU15953


Basic Information

Item Value
RNA id TU15953
length 4471
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G10738
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9989143 ~ 10010746 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atggattttattgattttttttttttcagacagatGTCATGCTCATAAATGTCCTTACAGAGTGAATAAAGAGCCAACTACACTGCTCTACACAACCCTATGGCAACAACTCTGACAGATTCGATCTCATCACACTATCAGCAGCAACTTCCTGTTTTACATACAACCTTCCGCTTGCACGGGACTGTTCTGCAATTGTTCTCGACCGCTGTGAATTGGCTAGATGGTGTGAATACAACAATTTGATCATAAATCCGTCGGTTGTCTGGCCGACCAGTCAGTGACCACCGTTCCGCAACGTATGTGTTCTCAGGTAGCCATACAATGAAAGCTTTGCATTGTGATGCCACAATAACAGAAGGCACAACTAGTGTACAAAAGTGAAAGATGACAAAGCTAACAAGAGGAAACGGAGGCTCGAGAAATGTGAACGTGATACATGATGTATTCTGTGCCCTGTCAATGCAAAACTCATTAACCTCAGTCCCTCCCCACAGTTAATATCAGCGGCCCCTTAAATTATCCCAGAAGCTGAAGTCAAGCCTAGTACCAACAATTCAGTCACAGTTATTCCTCATGTccattttttgtttcaattaattAGAATTATTGGCACCAGAAAGAAACTCGCactaacattaaatatattataaatacctAATATATCCTAAATTAATCTCTATACAATCAGTGGTGTTAATCAGTGCATTTATGTAAAcaattcaaaatagaaaacaaaaacaaatacattaaagataCTACGTTTCCAGAGATTCGTAAACAACTCACATTTCTTGAACGTACTGTTGCGATAACCAGAATATTGTGAGTGGACGACAGGCGGGGTACATTCTCTCTCAGCTCAGCGctgttttaaaaaggttttcgTGTTTTAGGATGAAAGTGTTCGCCTACGACTagcattttgaattttaatctACACATCCATTCAGCATGTGCGGGAGACTACGAGAGCTTTACTACAAAGGATACGACAATCATTTGCCTGTTTCATCACTTTAGGATGTGGTGAACCATACATTTCCTTGTCAGAACCCAGAAGAAAGTGCGcgtatttgaaatgaaaatctgtTGTTTCCTAAGGCTCACCTCAAAATCGCCTTCCTCACCCCAACCGGACGAATGACGCTTATCTCATTCGTTTTAGTTCTAGTCGGctgcaaatacaaaattataattaaaaagtgaaaaccATATATTCCTGTAAAACATCCATTAAAAGGGGTTTAACAGTAATAACGTATtctttcagggaaaaaaaaaaacggtggaTGAGTAAAACGGTATAAGGCAACAGCAAAATGCCCAAACCATAAGTAATACTTTACTACCAGTGTATGGCTACAGGTGAGACTGAGAAAATTAAAGTGAAGCCCttgtcatataaaaaaaagaagaaaaaaagaaggaaacatTTGTACAAGTGAACATAAACCACGTCTAAATGATGGATGttcacaataatataaatactatatacaATACAGTACCGCCTGGCGGATCTAAAGTGTATACATGAAGCTAGCAGAAAAATCCATTGGTTCTTTGCGACAGTGCCACGGCACTTTAAAGGTTAACCGGGTTAGTACACGCACCTCTCAAGGAGGCTGGTACTGGATTAGCATGTAGGATGTACTGTATACACAGACCCACACTAAGACTTTGAACAGgacctctctcttttttctttttttcattaattctgAGTTCTTCGTTTCGTTGCTATCGATGTGTATGGACCAAAGGACATGACAGATTCTAAAAGTTGTCTTACATGCATGCTATGGACGAAAGACTACTCTGTCGCCCTTCTCGAATCTTaaactcgttttttttttgtttgtttttttgtgaaggcaTCGTTTAGTGCTTTTTgtaatgtacaaaaatacaaaacataacaaCCAATAATCCACTCTGAATGTTGTTTGTCCGAAGATGGTACACATGCCACTTCCTGTCTTTTATGAATCTGTTAGCTAGTCACTTTGAATTACCTATGATATTATTTTGGCAATTTAAAcagacagtgttttttttttttCAACGTTGcgcatatttcacatttatttcacacCTGACAAAGTGTTAAGTGTCCACAGACATTAGAAGACACAGGTCCAACACTCAAAGAACTTGAGCACTGAGTACACTACAGCCCATTCATTATGGTATAAAGTGGTTACAGCCGTGTGCTAGGCCACACTTGGGTTTATATACAGAGCAAATCAACAGAAGTATTGAAGCAATTACAGTAGGTACACTTAGTTTATATTGagttccttcttttttttaatttgccatATTTGGATggatgtttatttgaaatgatgcTCGGAAAGACGTGGTAACACAAAGGATTGActgagagtgaaagagagaaaaagagagacacatTATCAACTACAAACCTTAAAAATCTTGTTTGTCTGCAATATATGTATGTTGACAAAGTCCTGTTGAATGCTTCATTTTCAGGGCACCGTGTTAATGCGAACACCACATGCTCAAAAAGTCCACTGTGatcctttaaaataatacaaccgAATCTATTACCTTTATGTAAATGCTACTCTTATACTGTATGGAGGTAAATGAGatacatttcatacatttcatttaaaagctgaataagTATGTACAGCATGCTATCATATACATAGCATTATCAAAGACAGGAATGGATAAAAAACATCAGGGCACTGGGAGGTACTGTATGACTGTCAACGTTGTCCAAAACCTAAATATCTGTctctaatttacattttagatccATATTCCATTTATCAAGGCATACTTATGCTGCTGTTTATGAAGAAACAATTTTGAGAGATAAAGACGAGACCTGCTGAACTCTCTCGGTTACTTTCTCAATAGATGTTGCTGCTACGATTGTGCTCTTTGGGTTGGCTGGCCCATGGCACAAAACAGCAATCCTGTATCTGTAACAGCAACACGCTAAATGGCTGACTGACCAATAGCATGAGCTTAAACCAAGCCAAACGAGAGATTCAAACACGGCCTCAGGTAATACCTCTATGTAAGTTTTTCATACTTAGTATACGCCGTCTTCATAGTTACAAGGCAAAGGGTGGAGCAAAAACCAGGTGTATATCATAACTGATACATAATGAACCGCTCAgctaagataaataaatatcactATATTGGCGATCACGAAAAATTTGGTAAAAGCTATCAgaattttagttatatattggAACGAATCAGATCTTCTCTTACAAGACTTGATCTTATTGCTGCTTCACTAGGAAACACTGTGTAAGAGACCTGAATACAGATAGTCGATATATTATAACATGTAAGGCTGAGATGAGCTGAACGTAGCAGTTACAAATGAGGACACAAACTTTCTGCATGATGTTATTTGAAATACGTGATTTAACCGAAATCAAATCTAACGTTAGTGCGTTCGGTATATCGGTATCCAGTCATTTAGCATCACAGCTCTATACATTTTGcgtgcaaataataaaaagttgtaaataaagtaAGATTAAAGAAGCTGATTCTCGTAGCAGCACAGCTCTTGTGCAAATGAACCAAAATGAACCTGCTAAATAAAGCTCATTATCAAAAGTGCAAGGTGAAAAATTATTTCGTAGCACACTACAAATAGTGACCtcttaataaattatgtttataaaacatacaacgcttaataaataagtaaacgtaaagatgtaatgtaaaaaagacattacagatgacaataaaaacacaaaataaacttcTGTATGGTAGACGTTTTGTACTTTTCCAATGCTGATTTTTGTCGAAATAACGCACatttacctctttttttttttcaagactaAAATCCATTGCAATCTTCTGTCGCCCACTGCATAAAAGGTGACCTCGATATAAGCTCTGCATCCTTTCATAAAGCACAATGATCGTGACAGATCAAAACCAAGAGGCAACTACTGAAGCCGAGGTAAAAGCACTTGACATCTACTCTGCAGAAGCACATACACAAACAGAGCACTGAGTCGCATTTACAAATGAACTAAGAGTAGGGCCGTGTCTAAGATGCTGTTTTGCCATTCTAGCTTTTAGCTATGTTAGCGGGAAGTGCTGAATATATTTCAATGTTGTAAATTTACACTAAATAtggcctgacacacacacacataaacacacacacactctgtgaagCCAGGCCCACAGTCTGTGGCTGGCATGGACAGACTGAGAGGGGAATGCTGGGATGGGCAGGCAAGAGGCAGCTGTGATGACATGGGGATAGGGCACTTATGATCACATGACCTAATTACATCACAACGGCCTGTTAGCTATCTGTTGTTTCAGCCAgagaaaaaacactttcacatCCTCATCTGTCCTGATTTTCTCCTGGAAAGCTTAGACCtgtgggaagagagagagattaggAAAAATTTAGCAATATCTTTCATCATGACCA

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15857 lncRNA upstream 162923 9825615 ~ 9826220 (+) True G10674
TU15761 lncRNA upstream 385300 9602366 ~ 9603843 (+) True G10604
TU15733 lncRNA upstream 411737 9577171 ~ 9577406 (+) True G10581
TU15718 lncRNA upstream 416350 9486177 ~ 9572793 (+) True G10571
TU15720 lncRNA upstream 479010 9486177 ~ 9510133 (+) False G10571
TU15979 lncRNA downstream 1191 10011937 ~ 10014366 (+) True G10752
TU15980 lncRNA downstream 3813 10014559 ~ 10015822 (+) True G10753
TU16060 lncRNA downstream 47786 10058532 ~ 10063814 (+) True G10819
TU16087 lncRNA downstream 130596 10141342 ~ 10141971 (+) True G10838
TU16057 lncRNA downstream 147807 10158553 ~ 10161809 (+) True selenof
XM_043224123.1 mRNA upstream 27668 9942861 ~ 9961475 (+) True myo7bb
XM_043221924.1 mRNA upstream 48396 9928426 ~ 9940747 (+) True sap130b
XM_043221348.1 mRNA upstream 61899 9917331 ~ 9927244 (+) False mllt1b
XM_043221366.1 mRNA upstream 61899 9917331 ~ 9927244 (+) False mllt1b
XM_043221357.1 mRNA upstream 61899 9917331 ~ 9927244 (+) False mllt1b
XM_043219759.1 mRNA downstream 25793 10036539 ~ 10040853 (+) True agxtb
XM_043253597.1 mRNA downstream 36102 10046848 ~ 10049106 (+) True thap4
XM_043253606.1 mRNA downstream 36102 10046848 ~ 10049106 (+) False thap4
XM_043224595.1 mRNA downstream 45219 10055965 ~ 10061716 (+) True stk25b
XM_043219487.1 mRNA downstream 64411 10075157 ~ 10077334 (+) True LOC122324805
XR_006247735.1 other upstream 72282 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 73652 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 237931 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 817228 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 1881366 8106865 ~ 8107777 (+) True G10212
TU16308 other downstream 700384 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 1229380 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 1329117 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 1485614 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 1485614 11496360 ~ 11498937 (+) False mast3a

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU901 True 4986 lncRNA 0.36 2 NC_035897.1 2239442 ~ 2246806 (-)