RNA id: TU15979


Basic Information

Item Value
RNA id TU15979
length 2157
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G10752
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10011937 ~ 10014366 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGTTTTCTCTCTATAGGGCTAAAGGGGTCGAGATCAGGACTGGAGGCACCAGAGTCTGGACTGCCATAGTGACCATCCACCAGTGACGGACAGGTGGAGGAGGGTGTTAAAGTGCTCAGAGGAGAAGAGGAACTGTCTCTTAAAAGTGATGCAGACATCTCcgatagctaaaaaaaaagagcaccaCCATATGATAAAGCTGGCAACGCATTACAAGTGTCTCATTCATCATATTCCAGAAAATGCCATGCTTACCCTTAAAGCATCTATTACACTAATCATGCTGCTCTACTCTAAATGAGTGAATGAGAGAAGTGaattgaagatttttttgatggctaaaagaaaaacactaaatatgacataataaaaatagagaGCTGGAGAAATATCTGGTCTGCATGGGCAAGAGAATGAGGCAAGGTCTGGACGGACACTAGGGCAGTAAAGGCTCACCTTGCTCTCACTGAGACTGCTGCTCACCTGGCTGTACTGCCTGTTGAAGGTGTGCATGAGCAGTCGCACAcactgaaaagagaaaaaaacatatagaaaATATAGTAGCACTTTAGAGGAGTGGTTTTCAACTTTacacatgttttaaaaacataggGACATGAACAGTATGATTTGAAAcagcatgacttttttttaattgaaatgaaaaagtttaattttgtttatttgtttttctttattagtGTTGGCATTACAAACAATTAAGGCAtatgaatagtttttttagaatgaatttttttagagtttattgtaagtaaaaaaataaataaagaagaaaacaaaataggTCTAAAAATTGAGCCTTGTGGTATTCTTTAACAAAACTGcatattcttatttaatataacttatataattatataactaaTATCATTTCAAAAACAACTGTGTAAAACAAACCTACAAGAATACATcctgaattcattttaatttgcctACCCAATtggctttttctttcttactttgttattttgtgtcaaataaaaatgttatttatacattaagtacaaatcaaaattaattaaatgattaaagatACCTTATCCAAAAACAAGTAAATTTATCTTTTCTTGAGGATATTTTTACACCATGTCTACACTGAATGCAACAATTCTGTTGCACCATGCCACAACAGGTAAAATCTTTCTACAATGGaccattaaaaatcatttggacATTGTATTTATGACATACTAGTGTCGGTATGTCATAAATATAACGTGGCATGAGTTTATTGTCTGGGTTTGTTGCAACATGCTGTATTTACACAcatgtttttttgctgtatatttattatattttgtttggttttgtcaaGCTGGACTTGGTTGGAATAGGCAATCAGTGCCATGTCATGTGGATATAAAGTGGCAACATCCACCTTGGCAGCCAGCTCCCTCTGCCTCTCGTTGGGACTGTCCAGACCAAGGCTCACTACTGGGTTGATCAAGGGGCTGGAGGCCTTAGGTGAGTCCATCAGGTCTTTGCCACAGAAAGAGTCCTGTCCCAGCAGCAGAGATGCTTCCAGCTTCTCTCTCAGCAGAAGGTAATGCCTGGTCTTCTCCACCTTGTAGAAGGCTAAGTTTCTCCAGCTCCCACTGGTGGTCCAGGATGAGACTGTCGCTGCGGGGCCTCCAACCCGCAAGGTTCTCCTCTCCTCGCACATATGCCACCGAGGTGTCCAGCACCCGTCTGCGCCTCCTTTGCATACCTGCACCATCATGGCAAAGcagcaaaatgaataaaaaaactgggttaaatatgcatatttctgTGATAAGTATTTGAATTTGTACACAATAGCTTACCAGGGCTTCCAATGTCAGCCAAATGGCAAAGGCTTAATTCATACACTCCAGTCACACGGTTACTGAGACACGAAAGGCAAACCAATTACAATGATAGTTCACATTTTTAGATATGAAGTCCTgaatattaaagattaaaaacagtGCACTGATTAACTCAAAATCAGTTTACTtaagagtccagcaaattttTCTCACCTCTCAGAAGGTCTAAAAGCACCTGTGCTGAAAAGGTTTCGAATGGAACGTGACGCAGGAAGTTTAGCATCTCTTGAGTAGAACACCATGCAAAAGTCCTTAGTGATGACAGTGGGCTGAGTGCAGTTCTCC

Function

GO:

id name namespace
GO:1902911 protein kinase complex cellular_component
GO:0016533 protein kinase 5 complex cellular_component
GO:1902554 serine/threonine protein kinase complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15953 lncRNA upstream 1191 9989143 ~ 10010746 (+) True G10738
TU15974 lncRNA upstream 18542 9992784 ~ 9993395 (+) True G10749
TU15857 lncRNA upstream 185717 9825615 ~ 9826220 (+) True G10674
TU15761 lncRNA upstream 408094 9602366 ~ 9603843 (+) True G10604
TU15733 lncRNA upstream 434531 9577171 ~ 9577406 (+) True G10581
TU15980 lncRNA downstream 193 10014559 ~ 10015822 (+) True G10753
TU16060 lncRNA downstream 44166 10058532 ~ 10063814 (+) True G10819
TU16087 lncRNA downstream 126976 10141342 ~ 10141971 (+) True G10838
TU16057 lncRNA downstream 144187 10158553 ~ 10161809 (+) True selenof
TU16166 lncRNA downstream 195197 10209563 ~ 10209851 (+) True G10883
XM_043224123.1 mRNA upstream 50462 9942861 ~ 9961475 (+) True myo7bb
XM_043221924.1 mRNA upstream 71190 9928426 ~ 9940747 (+) True sap130b
XM_043221385.1 mRNA upstream 84693 9917365 ~ 9927244 (+) True mllt1b
XM_043219759.1 mRNA downstream 22173 10036539 ~ 10040853 (+) True agxtb
XM_043253597.1 mRNA downstream 32482 10046848 ~ 10049106 (+) True thap4
XM_043253606.1 mRNA downstream 32482 10046848 ~ 10049106 (+) False thap4
XM_043224595.1 mRNA downstream 41599 10055965 ~ 10061716 (+) True stk25b
XM_043219487.1 mRNA downstream 60791 10075157 ~ 10077334 (+) True LOC122324805
XR_006247735.1 other upstream 95076 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 96446 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 260725 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 840022 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 1904160 8106865 ~ 8107777 (+) True G10212
TU16308 other downstream 696764 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 1225760 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 1325497 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 1481994 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 1481994 11496360 ~ 11498937 (+) False mast3a

Expression Profile