RNA id: XM_043223876.1


Basic Information

Item Value
RNA id XM_043223876.1
length 1070
RNA type mRNA
GC content 0.44
exon number 5
gene id selenof
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10158532 ~ 10161809 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGGGTGTGACGCACTTCCTGCTGAACTCGGTGGGCGAGTGGAAGAGAAACACTGATGGCGGGGGAGGTGTACCTGCTTTGGTTACTGCCGTTATTACAAACGCTGGCATCTTATGGAGCGGAGCTCTCCTCTGAGGCCTGCAGGGAGATGGGCTTCTCCAGCAATCTCCTGTGCAGCTCCTGTGATCTCCTGGGTCAGTTCAGCCTGGGCCAGTTAGACCTTCCCTGCAGGCAGTGCTGCCAAGAGGAGGCTCAGCTGGAGTCTAGGAAGCTCTATCCAGGAGCAATACTTGAGGTCTGTGGATGAAAATTGGGGAGGTTCCCTCAAGTCCAAGCTTTTGTCAGGAGTGACAAGCCAAAGATGTTCAGGGGTCTTCAGATCAAGTATGTGAGAGGCTCAGACCCTGTACTAAAGCTGCTGGACGATAACGGGAACATTGCTGACGAGCTCAGCATCCTCAAGTGGAACACAGACAGCGTCGAAGAATTTCTTAGTGAGAAGTTAGAACGAATTTAGACTCGGTTTCATATTTAAAGCCAGCTTTTCACTATTAGCTTTTTTGTATAAATCTAAATTTCAAAGAACCACTGTTAATTTTCATGCTTGATAATGGACATTAaaacattgttctttttttttttatataaatctttGGAAGTAAATGCATCAGTGTCTGGTTTAAGGTTAAGTGATCAGGACATACTGTacttatttttagtaaattctTCTCCTGCATATTGTTGAATCATTGATGTGCTGTGACCTTTTATACATCTTGTGTCTGAGTGAAGCCTGTTGAATGTGCTGGTTTGGTAAAGCTTGTGGCGACTCTTCAGAAGCGCATGTTTATGTGGATTTGCACGTTAGTGAAGGCCTGACAGTAAACCAGTTCCTGGCATGTGAGGCCTGAAGACCCTGTGTGACTCTCTGAGCATGTTGTTATGGCGAGAACCTTCGAGCTCTATCCCAGTATTGGACGCTGGAACCTcctcatttaaatgtttcaaaaaattCAATTTGAACTCAATTTCATtagcacacaaacaaataaacctgtttttcatattaa

Function

GO:

id name namespace
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0008430 selenium binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16087 lncRNA upstream 16561 10141342 ~ 10141971 (+) True G10838
TU16060 lncRNA upstream 94718 10058532 ~ 10063814 (+) True G10819
TU15980 lncRNA upstream 142710 10014559 ~ 10015822 (+) True G10753
TU15979 lncRNA upstream 144166 10011937 ~ 10014366 (+) True G10752
TU15953 lncRNA upstream 147786 9989143 ~ 10010746 (+) True G10738
TU16166 lncRNA downstream 47785 10209563 ~ 10209851 (+) True G10883
TU16203 lncRNA downstream 229891 10391669 ~ 10391956 (+) True G10902
TU16204 lncRNA downstream 230915 10392693 ~ 10393150 (+) True G10903
TU16198 lncRNA downstream 260159 10421937 ~ 10509519 (+) True G10901
TU16218 lncRNA downstream 283403 10445181 ~ 10482952 (+) True G10914
XM_043263585.1 mRNA upstream 38593 10114573 ~ 10119939 (+) True gtf2b
XM_043258511.1 mRNA upstream 51108 10096409 ~ 10107424 (+) False znf644a
XM_043258504.1 mRNA upstream 51108 10096421 ~ 10107424 (+) True znf644a
XM_043224583.1 mRNA upstream 78587 10078400 ~ 10079945 (+) True cldn18
XM_043219487.1 mRNA upstream 81198 10075157 ~ 10077334 (+) True LOC122324805
XM_043223700.1 mRNA downstream 6462 10168240 ~ 10198276 (+) True fam110b
XM_043223707.1 mRNA downstream 6462 10168240 ~ 10198276 (+) False fam110b
XM_043223715.1 mRNA downstream 6478 10168256 ~ 10198276 (+) False fam110b
XM_043253491.1 mRNA downstream 51113 10212891 ~ 10215867 (+) True LOC122355329
XM_043259687.1 mRNA downstream 163280 10325058 ~ 10336681 (+) True rab2a
XR_006247735.1 other upstream 241671 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 243041 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 407320 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 986617 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 2050755 8106865 ~ 8107777 (+) True G10212
TU16308 other downstream 549352 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 1078348 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 1178085 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 1334582 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 1334582 11496360 ~ 11498937 (+) False mast3a

Expression Profile