RNA id: XM_043259781.1


Basic Information

Item Value
RNA id XM_043259781.1
length 1006
RNA type mRNA
GC content 0.42
exon number 3
gene id lyrm4
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10662729 ~ 10665110 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atggtgacccaaaacagcacGGTTGCAAACTTTTATCGGaacatcttcctttgtgttcgccagaacaaagaaattcacacagatttggaactacaagggtgagtaaaagatgacagaattgtaatgtATGTCCTACTGTATGTTAGACCCAGTGGTCTCTGAGgtctgttatgtttttttttgtgtgtgtgatgatgatccAGTCATTGAAAGAGGCCCCATATGCCAACAGTCGGCCATGATGCGGCCCCAGGGATCTTCTGTGGTCTCCCCAGGCACAACACTACTGTGGACATGAATTTCTCCTAATGTGATGCTAACTCTTCCTGTATAGCGCTcataaaagaaatggaaaaattaaGAGAGCGCCTCCAGTGACTTGCAAATCCATTTTAGCATAAAACCTGGAAGAACGAAACACTACAATGGGTAATCAATTTGCAGAAATGTCCCGAAATGTACTAGTAGGCTGCTAAGATGGCATTTGCCTCTTTATTGTAGGAATGCACGTCGTGCTTTATATTCCGCGGCCATCTGCTCAGCGGATCCTGACGCTAGAGGGCGATGTATCACACGCGACCCAACGCAACGCGAGAAGAACCGCACTGAATCCAACATGGCGTCGTGCAGCAGGGCTCAGGTGATCTCTCTCTACAGGATGCTTATGAAAGAGAGTAAAAAATTCCCCTCGTATAGTTACAgAACATACGCACTTCGCAGAGTGAAAGATGGCTTCAGGGAGAACCTTCATGTGGACAACCCCAAAACTCTGGATATGCTCATAAATCAAGCTAGAGAGAATCTGGCGGTCATCAAGAGACAGGTTTCCATTGGCCATCTGTATTCTGCCCAGAAGCTAATTGTTGAAAAAGAgcctcatttataaatgtctgGTGGTTTGTTAATGACAAACCTGTTTATCCATGtttgtaaaattgtatattagagtgtattgtaaatgtatgtttatgttacattttgtagaaaataaataagatcTAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252713.1 lncRNA upstream 93721 10567881 ~ 10569008 (+) True LOC122359526
TU16195 lncRNA upstream 122739 10507334 ~ 10539990 (+) False G10901
TU16191 lncRNA upstream 141019 10507334 ~ 10521710 (+) False G10901
TU16200 lncRNA upstream 141019 10507334 ~ 10521710 (+) False G10901
TU16201 lncRNA upstream 153210 10489590 ~ 10509519 (+) False G10901
TU16444 lncRNA downstream 93942 10758056 ~ 10831642 (+) True G11077
XR_006252711.1 lncRNA downstream 155997 10820111 ~ 10822197 (+) True LOC122359515
TU16501 lncRNA downstream 232569 10896683 ~ 10897497 (+) True G11106
TU16516 lncRNA downstream 288936 10953050 ~ 10978280 (+) True G11117
TU16523 lncRNA downstream 455773 11119887 ~ 11123114 (+) False LOC122359491
XM_043259743.1 mRNA upstream 2268 10658601 ~ 10660461 (+) True nrn1b
XM_043259622.1 mRNA upstream 46433 10611990 ~ 10616296 (+) True nebl
XM_043259629.1 mRNA upstream 46433 10611990 ~ 10616296 (+) False nebl
XM_043259635.1 mRNA upstream 72269 10584873 ~ 10590460 (+) True bmi1b
XM_043259330.1 mRNA upstream 128619 10530608 ~ 10534110 (+) True klhl40a
XM_043259616.1 mRNA downstream 1791 10665905 ~ 10671812 (+) True rpp40
XM_043259491.1 mRNA downstream 28396 10692510 ~ 10702785 (+) True oxsr1a
XM_043259432.1 mRNA downstream 39132 10703246 ~ 10706943 (+) True slc22a13a
XM_043259441.1 mRNA downstream 39132 10703246 ~ 10706219 (+) False slc22a13a
XM_043259452.1 mRNA downstream 69802 10733916 ~ 10741971 (+) True csrnp1a
XR_006247735.1 other upstream 745868 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 747238 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 911517 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 1490814 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 2554952 8106865 ~ 8107777 (+) True G10212
TU16308 other downstream 47016 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 576012 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 675749 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 832246 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 832246 11496360 ~ 11498937 (+) False mast3a

Expression Profile