RNA id: XM_043259542.1


Basic Information

Item Value
RNA id XM_043259542.1
length 2580
RNA type mRNA
GC content 0.50
exon number 4
gene id fbxl7
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10392682 ~ 10421475 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ccccttgtcCCTGCCATTGGGGAGTATCTGTGGGAGGCATCTGGTTTGTTATTCTAAGTTTGTGATGGACAGAAAAAGAATGCCTGGCATTTATCGTAAGATTTGGGAAAGGCAGTTCCAGTATTTCCTCCGACCTGAGTTCAAGTACAGATCAGACATCAACCAAAGCTCCAAAGAATGCAGCTACCAGTGAAGACTCGGACCTTAGCATGCGAACAGTGAGTACACCAAGTCCGGCTCTGATTTTGCCGCCTCGTTCATCTCCAGGCGTGCTTAATGGCTCCTCCACGTCTTCCTCCACGTTCGGCACGGAAACCATCGCCATGGTCCACACGCCGCCCGCTTCCCTCTCCCATCCGCAAAGGAGCCTGCGACAGCCGAGGGACCAGCAGGGGGCGCCCATCGACATCCTTCCTGACCATGCTTTCTTGCAGATCTTCACCCATCTGCCCACCAACCAGCTGTGTCGGTGCGCCCGTGTCTGCCGCCGCTGGTACAACTTGGCGTGGGACCCGCGCTTATGGAGGACTATTCGTCTGACGGGAGACGTGCTACATGTAGACCGCGCGCTTCGGGTTCTCACTCGCAGACTGTGCCAGGACACCCCGAACGTGTGTCTCACCCTGGAGACGGTGATGGTGAGCGGCTGTCGGAGGTTGACCGATCGAGGACTGTACACTGTGGCTCAGTGCTGCCCGGAACTGCGTCGCTTAGAGGTGGCCGGCTGCTACAACGTGTCCAATGAGGCCGTGTTCGAGGTGGTGTCACGCTGCCCCAACCTGGAACACCTGGATGTTTCAGGGTGCTCTAAGGTGACCTGCATCAGCCTGACGCGGGACGTGTCCGTCAAACTCTCCCCTCTTCACGGGCAGCAGATCTCCATCCGCTATCTTGACATGACGGACTGTTTTGCTCTGGAGGACGAAGGCCTGCACACCATTGCCGCCCACTGCACTCAGCTCACCCACCTCTACCTGCGGCGCTGTGTGCGGCTGACCGACGAGGGCCTGCGCTTCTTAGTCATCTACTGCCCGTCCGTGCGGGAGCTGAGCGTCAGCGACTGCCGCTTCGTCAGTGACTTCGGCCTGCGGGAGATCGCCAAACTCGAGGGCCGCCTGCGCTACCTCAGCATAGCGCACTGCGGCCGCATCACAGACGTGGGCGTGCGTTACGTAGCCAAATACTGCAACAGACTGCGTTACCTGAACGCTCGGGGCTGCGAGGGGTTGACGGACCACGGCATCGAGCACCTCGCCAAGAACTGCCTCAAGCTCAAGTCCCTGGACATCGGGAAGTGCCCGCTGGTGTCGGACGCCGGCCTGGAGCAGCTTGCACTAAACTCCTTCAACCTGAAGAGACTGAGCCTGAAGTCATGCGAGAGCATCTCGGGCCGCGGGCTGCAGGTGGTGGCGGCCAACTGCTTCGACCTTCAGCTGCTGAATGTACAGGACTGTGATGTGCCACTGGAGGCGCTGCGCTTTGTCAAGCGTCACTGCAAACGCTGCGTCATTGAACACACCAATCCAGCCTTTTTCTGAGAGCTGCACAGACTGGGATTGTGTGCTCTTGTGACCCGGGCCGGTGACGTCTCTGCTGGACAACACAGTGGAGATTTGCACTGCTGCACCTCTGTATTTAATTTGCATGGTTGGGAGAaatattaaaggaacagtttccccgaaaatgaaaattaccaaACAATCTACTCAcctccaagccatcctaggtgtatatgactttcttctttcagacgaacacagagtttaaaaaaaaattatcctggctcttccaagcttagtaatgctggtggatagtggcccttattttgaagctctataaattattatatatccAACCCACACATCCCTAGGgatgtcttctgaagcaaatcgatgtgtttttgtaacaaaaaatatttctgtttgtaaaattacaacctaaggcgtataggttagttttacaacAGATATGAGTTGTTATATGAGTTATAgcgcttcaaaataatggtcacCATCCACCGGCATTAACAatcttggaagagccaggataaattttttaaaaactcaatttgtctgaaagaagaaagtcatatacacctaggacggcttgggggtgagtaaagtGTGGGGTAATTTTAGCTTTtgggcaaactattcctttaacttttttttttatccatttatttatatttttattcacttatatatttttgattactCATCTTGTTTATGGCAGGTTGTATTACGTGTAACATGTACATTTCAATTTGTTGGCGTGTAAAGGATTACATGATGTGACGTTAACCAGAAACTAGACATATTTCCCAGAACTAAGGCGGTCCACGGTTCGTGTTTGTTGATGTTTACATTTGATATCTCTGTTATgaatgttttgctttgtttcatcATGTAAGCCTTGTAATAGCTTGGTTTCCATCTTGGTTTCATTGACCAGGAATATTTCAAACAGTGCCATTTTGCTGTGACGTTCACCTTTGTAATGGTCAATAAGGCTTTTTCAGGTGTTTAACAAATGGAAGACCACAGTGGAATAAAGAGGTCTAAGccatattaaacaaaa

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16322 lncRNA downstream 72317 10318984 ~ 10320365 (-) False ca8
TU16318 lncRNA downstream 165826 10226218 ~ 10226856 (-) True G10987
TU16144 lncRNA downstream 232618 10158578 ~ 10160064 (-) True G10869
TU16114 lncRNA downstream 296980 10095217 ~ 10095702 (-) False hfm1
TU16112 lncRNA downstream 300024 10090936 ~ 10092658 (-) False hfm1
TU16411 lncRNA upstream 248340 10666477 ~ 10666712 (-) True G11057
TU16424 lncRNA upstream 249505 10667642 ~ 10668053 (-) False G11064
TU16425 lncRNA upstream 249677 10667814 ~ 10668967 (-) True G11064
TU16426 lncRNA upstream 249677 10667814 ~ 10668124 (-) False G11064
TU16423 lncRNA upstream 250925 10669062 ~ 10669414 (-) True G11063
XM_043255291.1 mRNA downstream 72279 10314033 ~ 10320403 (-) True ca8
XM_043259401.1 mRNA downstream 116655 10223331 ~ 10276027 (-) False tox
XM_043259420.1 mRNA downstream 116656 10223331 ~ 10276026 (-) False tox
XM_043220440.1 mRNA downstream 234661 10146582 ~ 10158021 (-) True hs2st1a
XM_043255931.1 mRNA downstream 248973 10140937 ~ 10143709 (-) True lmo4
XM_043259720.1 mRNA upstream 11657 10429794 ~ 10433121 (-) True LOC122359424
XM_043259604.1 mRNA upstream 47172 10465309 ~ 10476229 (-) True inhbab
XM_043259280.1 mRNA upstream 63533 10481670 ~ 10489280 (-) True afg3l2
XM_043259288.1 mRNA upstream 63533 10481670 ~ 10489279 (-) False afg3l2
XM_043259660.1 mRNA upstream 89186 10507323 ~ 10520967 (-) True ctdsplb
unassigned_transcript_206 other downstream 3059 10389551 ~ 10389623 (-) True trnak-cuu_1
TU16347 other downstream 14471 10376063 ~ 10378211 (-) True G11011
TU16135 other downstream 249014 10142043 ~ 10143668 (-) False lmo4
XR_006253077.1 other downstream 253097 10121767 ~ 10139585 (-) False pkn2a
TU15736 other downstream 873160 9500139 ~ 9519522 (-) False plppr5a
TU16485 other upstream 339891 10758028 ~ 10764891 (-) True G11102
TU16480 other upstream 349837 10767974 ~ 10861554 (-) False LOC122359216
TU16478 other upstream 351378 10769515 ~ 10783951 (-) False LOC122359216
TU16500 other upstream 382579 10800716 ~ 10803288 (-) True G11105
TU16716 other upstream 917594 11335731 ~ 11339597 (-) False trnau1apb

Expression Profile