RNA id: TU16471


Basic Information

Item Value
RNA id TU16471
length 1566
lncRNA type intronic
GC content 0.37
exon number 2
gene id G11096
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10746541 ~ 10819202 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTGATCATGCCAATGCAAAGAGATGTCATCAAGAATCACTTTGCTTTAGCATATAAAAATCTTTGTTCATAGCTAAAACTTTTAGACATTATGACAAAGAATTTAAGCTTAAAGAGGTATTGTATTATTTAGCTCTTCCCATTACAGGAAAAATGAAGTCCTGTATATGACACTATTCTTAGATGTGGCAGTGATGATATCAGATCAATATTTATACCACAGAAATTCCATTGCCATTCATACAATACCTGTATTTGCATAGATTAATAAATTAcgtgaaaaacacattttactgaGGCAACATTTCTCTAGTgttaactgttttcaacaaaacttaaaactaaatattacgCTTTCATCCTGAAGTGCACATAAATCACTAtgaacaaaggaaaaaaaatcacatcaaaatcatttcaaaaatCTAATAAGCCCAGAAGTTAGTTtgctaaattaaacaaatgcaaaaccccTTGCcctgtattactgttttttacttttttaccaTAATTAGCATTCCcacaacataaaataaaaaccaaaccggttctaaaatatataaacaaagccaaaaatgttatgcttttttctaaacaaaatgatttattttgtcaCAGTGTTCTAAAGACGCTTTGCGTATATTTTGCCATTAGCTCTATAATCTACACTGTGTTGAGTTTAACACAGTAATCCATGAGTGTTTATGTCATagctaaataaatactacaaataaGGGTTTCAGGTGCTACTTTCAACCTTTTGTGGGATTTAAAACTGGCAGATGAAACCAAGCAATTGCAATGAATCAAGCTATTTAAAAAGGTTTCAATTTAGTAACATAACTAAATTAAGATctacacaattaaaaacaacaccCTACACACATTCCAGCAACCTACAATCATCATGACTACtagacacaaaataaaacgtaaattGCACAcaaccgtttaaaaaaaacacactcgaTACCAATTCGCCAAAACCTGATCCTAACAGTAACAAAGCCAATAAAAACGCACACCTGATGATTGTTGAGCAACTGCGTAaacaagacacaaggtagtAACTGGTAGTGACACTACTGAGGAGCAGCCTCGTCTCTGACATGTGCATTATGGGAATCAAAAGAGGTCAGGTCAGAGGACACGTCCTCATCTCTGCCCTCAGACAAGCTGCTCTTCAGAGAGCGTGGCACATCAGAAAAGCCCTGATCGACACCATCAGTTTCCAGGGGGAAATGTGCAGACTCATTCAGCTGCATGGGATATTCTTCAGGCAGGGCAGATGAGTCGAGATGAAGGGCGGCGGGGTCAATGAGCAGAGAAGAGATGTCTATAGGAGGCACAGAGGAGTCGAGAGATGGGATTGAAGAATTCATTAAAGACGCCACGTCTGTGGGCATGCTATGATCAAGAGGCAGATTTGGGAGAAGAGCTTGTGGGAGAGGAAGGGGAGGAGGAACATTTGAAGCTGGTGCGAAAGAACTAAAATCCACAGCAGGATACTCCTCTGTATTTTGTTCCTCATGGTTATGACTGGGAACATCAGTGTCTTGAAGctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16423 lncRNA downstream 77127 10669062 ~ 10669414 (-) True G11063
TU16422 lncRNA downstream 77127 10669198 ~ 10669414 (-) False G11063
TU16425 lncRNA downstream 77574 10667814 ~ 10668967 (-) True G11064
TU16426 lncRNA downstream 78417 10667814 ~ 10668124 (-) False G11064
TU16424 lncRNA downstream 78488 10667642 ~ 10668053 (-) False G11064
TU16497 lncRNA upstream 54230 10873432 ~ 10874177 (-) False G11104
TU16507 lncRNA upstream 78347 10897549 ~ 10902543 (-) False LOC122359462
TU16514 lncRNA upstream 96869 10916071 ~ 10918689 (-) True G11115
TU16517 lncRNA upstream 133725 10952927 ~ 10978280 (-) True G11118
XR_006252710.1 lncRNA upstream 282320 11101522 ~ 11104592 (-) True LOC122359508
XM_043259254.1 mRNA downstream 19695 10710965 ~ 10726846 (-) True xirp1
XM_043259352.1 mRNA downstream 61886 10669470 ~ 10684655 (-) False cdyl
XM_043259342.1 mRNA downstream 61886 10669470 ~ 10684655 (-) True cdyl
XM_043259675.1 mRNA downstream 81471 10664288 ~ 10665070 (-) True LOC122359387
XM_043259267.1 mRNA downstream 90692 10625072 ~ 10655849 (-) True rreb1b
XM_043259526.1 mRNA upstream 11908 10831110 ~ 10861595 (-) True LOC122359216
XM_043259791.1 mRNA upstream 44869 10864071 ~ 10889273 (-) True col15a1b
XM_043259774.1 mRNA upstream 78352 10897554 ~ 10902625 (-) True LOC122359462
XM_043259645.1 mRNA upstream 336060 11155262 ~ 11159313 (-) True LOC122359349
XM_043261904.1 mRNA upstream 387242 11206444 ~ 11227249 (-) False slc12a7a
unassigned_transcript_206 other downstream 356918 10389551 ~ 10389623 (-) True trnak-cuu_1
TU16347 other downstream 368330 10376063 ~ 10378211 (-) True G11011
TU16135 other downstream 602873 10142043 ~ 10143668 (-) False lmo4
XR_006253077.1 other downstream 606956 10121767 ~ 10139585 (-) False pkn2a
TU15736 other downstream 1227019 9500139 ~ 9519522 (-) False plppr5a
TU16716 other upstream 516529 11335731 ~ 11339597 (-) False trnau1apb
XR_006253162.1 other upstream 562904 11382106 ~ 11405700 (-) False kcnn1a
XR_006253161.1 other upstream 562904 11382106 ~ 11405697 (-) False kcnn1a
TU16731 other upstream 623216 11442418 ~ 11445113 (-) False cnn2
TU16759 other upstream 629556 11448758 ~ 11449423 (-) False crsp7

Expression Profile