RNA id: XM_043259526.1


Basic Information

Item Value
RNA id XM_043259526.1
length 1958
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC122359216
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10767974 ~ 10861595 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGACTACTTGAAtgtatgagaaaaaaaactgaccagTCCTAAAGAATGATCTCTACCACGATGGACGTGGGAACGTTACTTAGCCGCTCGATTCTGCTGGCTTTGCTCGTATTCACGGCGACCCAGGAGGCGCGAGGATTGCTGTGTTTTTGCGAGCGATGTGTAAATCGGACATGCAACACGACTGGCCTGTGTTTTGCTGTCATTGCAAAGTCTGCCGGACAGTTTGTGACACAGGAAAGCCAGTGCATTCAGCAGGATGATCTTTACCCTCGGGACAGGCCTTTCCAGTGCCCCTCCAACAACGGCAAGCATCCGTACTGCTGTGACACACACATGTGCAACAAGAACCCAAAGGTCAACCCAGAATTGCCTGATACTGGACCCCAGTCTCTGAGTCCCATAGCCTTAGCCGCGGTGATTGCCATCCCCATCTGCGTACTGAGCTGCATGCTGGTGCTGCTCTTTTACATGTGCCATAATCGCTCCATCATCCACCATCGTGTGCCAAGTGAGGAAGACCCCACTATGGACCACCCATTCCTCGCTGACGGCACCACGCTGAAGGACCTCATCTATGACATGACCACTTCTGGATCAGGCTCAGGTTTGCCGCTGCTAGTGCAGAGGACCATTGCCAGAACCATCATCCTCCAGGAGAGTATAGGGAAAGGCCGTTTTGGAGAGGTGTGGAGGGGCCGCTGGCGTGGAGAGGAGGTGGCAGTGAAGATCTTCTCCTCCAGAGAGGAGCGATCTTGGTTCCGTGAGGCAGAGATCTACCAGACTGTCATGCTTCGTCATGAGAACATCCTGGGCTTTATTGCTGCAGACAACAAAGATAACGGCACATGGACTCAGCTGTGGCTGGTTTCTGATTACCATGAGCACGGCTCGCTCTTTGACTACCTGAACAGGTACACGGTCACAGTAGAGGGCATGATCAAGCTGTCCCTTTCCACCGCCAGCGGTCTGGCTCATCTACATATGGAGATTGTGGGCACTCAGGGTAAGCCTGCAATTGCCCATCGTGATCTGAAATCTAAAAACATCTTGGTGAAGAAGAATGGTACGTGCTGCATTGCTGACCTTGGATTGGCTGTGCGCCACGACTCGGCCACAGACACAATTGATATTGCACCCAACCACAGAGTGGGCACTAAAAGGTATATGGCCCCTGAGGTGCTGGATGACTCCATTAACATGAAGCACTTTGAGTCTTTTAAAAGGGCTGACATCTATGCCTTGGGTCTGGTGTTTTGGGAAATTGCTCGCAGATGTTCAGTTGGAGGCATCCATGAGGACTACCAGCTGCCTTACTATGACCTTGTACCATCTGATCCGTCTATAGAGGACATGAAGAGGGTAGTGTGTGACCAAAAGCTTCGTGCCAACATCCCTAACAGGTGGCAGAGCTGCGAGGCCCTGCGCGTGATGGCAAAGATCATGAGGGAATGCTGGTACGCCAACGGAGGCGCTCGCCTCACTGCGCTTCGAGTGAAAAAGTCTCTGTCTCAGCTATGTCAACAAGAAGGCATCAAGATCTAGAGCAAAACTCTCCTCATCTTTACACTGCCTATTCACTCCCTCCACTCATCTAGAGAGGACAGCGGGGGAATATCGAGGGACCAGAAAGGATTGGTGCTGTTTCACTGTTGTCCATAAACGGATACCTCCTCATCGTGCAAGAACACCTCAGACAAACTTTACCAGCCATGCTTCATCTGGTGAGTCACCACCATACATCAACCACAGATGGCCATTCGTTGCGATAGATGTGGACTTGAGCCTTTTGGACTTGTTTCTGTATATAGCCCGTTGTCTATAGATGTACATATCTGCAGTCTTCGTCCCAGGAAATGCCCCTGTTCTGAAACACTCGTGTTTACCACATTTGGTGGAAAAGGATCTTTGTAGGTATCAAGTCACTACATCTCTTTACATCCCACATCGGATTTAAA

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG:

id description
K04674 TGFBR1, ALK5; TGF-beta receptor type-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16483 lncRNA downstream 1821 10757190 ~ 10829289 (-) False G11101
TU16484 lncRNA downstream 1821 10757190 ~ 10829289 (-) True G11101
TU16482 lncRNA downstream 2471 10757190 ~ 10828639 (-) False G11101
TU16487 lncRNA downstream 2958 10756589 ~ 10828152 (-) True G11103
TU16471 lncRNA downstream 11908 10746541 ~ 10819202 (-) True G11096
TU16497 lncRNA upstream 11837 10873432 ~ 10874177 (-) False G11104
TU16507 lncRNA upstream 35954 10897549 ~ 10902543 (-) False LOC122359462
TU16514 lncRNA upstream 54476 10916071 ~ 10918689 (-) True G11115
TU16517 lncRNA upstream 91332 10952927 ~ 10978280 (-) True G11118
XR_006252710.1 lncRNA upstream 239927 11101522 ~ 11104592 (-) True LOC122359508
XM_043259254.1 mRNA downstream 104264 10710965 ~ 10726846 (-) True xirp1
XM_043259352.1 mRNA downstream 146455 10669470 ~ 10684655 (-) False cdyl
XM_043259342.1 mRNA downstream 146455 10669470 ~ 10684655 (-) True cdyl
XM_043259675.1 mRNA downstream 166040 10664288 ~ 10665070 (-) True LOC122359387
XM_043259267.1 mRNA downstream 175261 10625072 ~ 10655849 (-) True rreb1b
XM_043259791.1 mRNA upstream 2476 10864071 ~ 10889273 (-) True col15a1b
XM_043259774.1 mRNA upstream 35959 10897554 ~ 10902625 (-) True LOC122359462
XM_043259645.1 mRNA upstream 293667 11155262 ~ 11159313 (-) True LOC122359349
XM_043261904.1 mRNA upstream 344849 11206444 ~ 11227249 (-) False slc12a7a
XM_043261896.1 mRNA upstream 344849 11206444 ~ 11227248 (-) True slc12a7a
TU16500 other downstream 27822 10800716 ~ 10803288 (-) True G11105
TU16478 other downstream 47159 10769515 ~ 10783951 (-) False LOC122359216
TU16485 other downstream 66219 10758028 ~ 10764891 (-) True G11102
unassigned_transcript_206 other downstream 441487 10389551 ~ 10389623 (-) True trnak-cuu_1
TU16347 other downstream 452899 10376063 ~ 10378211 (-) True G11011
TU16716 other upstream 474136 11335731 ~ 11339597 (-) False trnau1apb
XR_006253162.1 other upstream 520511 11382106 ~ 11405700 (-) False kcnn1a
XR_006253161.1 other upstream 520511 11382106 ~ 11405697 (-) False kcnn1a
TU16731 other upstream 580823 11442418 ~ 11445113 (-) False cnn2
TU16759 other upstream 587163 11448758 ~ 11449423 (-) False crsp7

Expression Profile