RNA id: TU16485


Basic Information

Item Value
RNA id TU16485
length 2944
RNA type TUCP
GC content 0.39
exon number 3
gene id G11102
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10758028 ~ 10764891 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGCACTTAATTTCAGCCCATGTAAGATATTGTAAGCACATTTTACCAAAAGTCATGCTCTTCACAGAAAATGTGCAGTTCATTCCAGTGGGTTGTTTCGTAACGTTTGTCAAACCGAGCCACCGTGTTAAGTTGAGGGTTTTCTAATGTCATCTGTCATGTTCACAGGTATATGGCCCTGAGGTGCTGGATGACTCCATTAACATGAAGCACTTTGAGTCTTTTAAAAGGGCTGACATCTATGCCTTGGGTCTGGTGTTTTGGGAAATTGCTCGCAGATGTTCAGTTGGAGGCATCCATGAGGACTACCAGCTGCCTTACTATGACCTTGTACCATCTGATCCGTCTATAGAGGACATGAAGAGGGTAGTGTGTGACCAAAAGCTTCGTGCCAACATCCCTAACAGGTGGCAGAGCTGCGAGGCCCTGCGCGTGATGGCAAAGATCATGAGGGAATGCTGGTACGCCAACGGAGGCGCTCGCCTCACTGCGCTTCGAGTGAAAAAGTCTCTGTCTCAGCTATGTCAACAAGAAGGCATCAAGATCTAGAGCAAAACTCTCCTCATCTTTACACTGCCTATTCACTCCCTCCACTCATCTAGAGAGGACAGCGGGGGAATATCGAGGGACCAGAAAGGATTGGTGCTGTTTCACTGTTGTCCATAAACGGATACCTCCTCATCGTGCAAGAACACCTCAGACAAACTTTACCAGCCATGCTTCATCTGGTGAGTCACCACCATACATCAACCACAGATGGCCATTCGTTGCGATAGATGTGGACTTGAGCCTTTTGGACTTGTTTCTGTATATAGCCCGTTGTCTATAGATGTACATATCTGCAGTCTTCGTCCCAGGAAATGCCCCTGTTCTGAAACACTCGTGTTTACCACATTTGGTGGAAAAGGATCTTTGTAGGTATCAAGTCACTACATCTCTTTACATCCCACATCGGATTTAAACCAAGCACTCGTTTGCAAGCAGCTCATCAGTTAAAAAGAGTAATATTGTGCTGATTGCTGTAGCACCGATTCCAAAGACTCACCTGATTATTTGGAAATGGTTTCGTAATTTGGCTCACGACTTCAGCGTATTCTCTTTtcagagaccgagagagagccTGAAGGGACCAGCCAAGAAAACTGGGTTAGTCATCAAAAGCCATTTGTACAAAGGCCAACTTAGCTGAAGCACATCTGCTTGAACGTAATAAGGACATGTGTGTTTTATGCACATTTGAAAGGATGGTGCTGTCGTGATAAAGATCcgatttatttttctgtagtATTTAGTTTCCATTCTTGCCCCTTGAGgctttaaaggattagttcacccagaactgaaaaatctgtcattaaataCTCTCCTCGTGTCCTTTGAAATCCGTAAGACCTTTCTTCGgaatacaaatgttttgatgaaatccaagagctttttCAACgtgcatagacagcaagggtCCTACCACTATCAAGGTCCTACCACTTTAGACTATGCTGCCTAAAGAGGGTCAGggagctctcggatttcatgaAAACCttaaatttgtgttctgaagataatcaaaggtcttgcaggtttggatggtgagtaattaatgacagaatttttggctgaactgtccctttaagaaaacATGGACACAGAAAGAAGCTAACCACGACCTATTGTATTTTGCTCTGTGTATGTAGTCTGTACACGTTCTTCAGGTCGAGTTATCCAGTTCTGCTCTACTTGCCGTTTTCATTCAGATCTGTAAAACACACCGTATTGATTGTGACCTCATGCATATAGTTGAGCACCCGTTTTTGAGCCGCAATCTCATGGATGTATCATGTGTCTGTATTTGGTCAAGCCAAGCAATAAGttctccttttattttattcatagcTGGAAGATGCATGTGGTCAATGAATGTGATCTCAACTTTTAGTCAGTTTgtagacattttaaagaaatacgcTTTTATTTTCTACAGCCAAATACAAAGCTGAAGTGATCTTCTGGGGTGTTTTTAACGGTTAAGTCCGGTGGAAATCTATGTGTAGCAAAGACACTCTTTGAAGATTTGGATGTGAAGATGTTAACCAGGCTACTTTaaagggatccttcacccagaAATGGAAAtagtcatcatttttttttttttttaatctgagagATTTCAGTCGTTCCTGCAGTCCCAATCTACGTAACCAAAAGTttgacactttaaaaaaagttcatgaTTTCTATGGGTTTCTTTTATAATCGTTCTGTTCTTCATATAAAAGCAATTGTGTCTTTACAGAAGACTTGAATTAAATTGCTTGATTTATGAggatttattttacaatgtctATGAACATTGTAAAGGTCAAAGATGACGGAAAAAGAACTcaatggaatttaaaaaaaaaaaaaaaacatatcctCATTTGTGtgaaagatgaacaaaagacatacaggtttgaaaagaataactgatgacagatttttttcataACTCCCCATCACTCTGGATTCATGCTAGAAACACAATGCCAACAATCACCAGCAGCCTTCAGAATGTTACAGTGTTACAGTCCAAGAATTAAATGTCTAGATTTCTCTAGATATTCACCTCTCCAGCTCAGATATTTTCTACAGATTCAGTTTCCATAGTTTGTTTTTTcgcatgtgtgcgtgtatataaaatatgcagttgtttttttgaacagtaagatttgttttttaacgAAGCCACCTCTGCTCACCAGAGTACAGCATAGACAGTGCAACTTATtttaacggtaaaaaaaaataaattaatggtttactatgaaaaataatttttaaataaatgtaaacatttacaaaatcatTAGACACTCTAgacttcagaaattattttgatattctgatttgctgttcaaaacaaaaataaaaattaaaataaatgataaataaatggtaaagtgtgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16423 lncRNA downstream 88614 10669062 ~ 10669414 (-) True G11063
TU16422 lncRNA downstream 88614 10669198 ~ 10669414 (-) False G11063
TU16425 lncRNA downstream 89061 10667814 ~ 10668967 (-) True G11064
TU16426 lncRNA downstream 89904 10667814 ~ 10668124 (-) False G11064
TU16424 lncRNA downstream 89975 10667642 ~ 10668053 (-) False G11064
XR_006252709.1 lncRNA upstream 29467 10794358 ~ 10796074 (-) True LOC122359505
TU16491 lncRNA upstream 38596 10803487 ~ 10883304 (-) True G11104
XR_006252716.1 lncRNA upstream 38624 10803515 ~ 10803936 (-) True LOC122359532
TU16497 lncRNA upstream 108541 10873432 ~ 10874177 (-) False G11104
TU16507 lncRNA upstream 132658 10897549 ~ 10902543 (-) False LOC122359462
XM_043259254.1 mRNA downstream 31182 10710965 ~ 10726846 (-) True xirp1
XM_043259352.1 mRNA downstream 73373 10669470 ~ 10684655 (-) False cdyl
XM_043259342.1 mRNA downstream 73373 10669470 ~ 10684655 (-) True cdyl
XM_043259675.1 mRNA downstream 92958 10664288 ~ 10665070 (-) True LOC122359387
XM_043259267.1 mRNA downstream 102179 10625072 ~ 10655849 (-) True rreb1b
XM_043259526.1 mRNA upstream 66219 10831110 ~ 10861595 (-) True LOC122359216
XM_043259791.1 mRNA upstream 99180 10864071 ~ 10889273 (-) True col15a1b
XM_043259774.1 mRNA upstream 132663 10897554 ~ 10902625 (-) True LOC122359462
XM_043259645.1 mRNA upstream 390371 11155262 ~ 11159313 (-) True LOC122359349
XM_043261904.1 mRNA upstream 441553 11206444 ~ 11227249 (-) False slc12a7a
unassigned_transcript_206 other downstream 368405 10389551 ~ 10389623 (-) True trnak-cuu_1
TU16347 other downstream 379817 10376063 ~ 10378211 (-) True G11011
TU16135 other downstream 614360 10142043 ~ 10143668 (-) False lmo4
XR_006253077.1 other downstream 618443 10121767 ~ 10139585 (-) False pkn2a
TU15736 other downstream 1238506 9500139 ~ 9519522 (-) False plppr5a
TU16480 other upstream 3083 10767974 ~ 10861554 (-) False LOC122359216
TU16478 other upstream 4624 10769515 ~ 10783951 (-) False LOC122359216
TU16500 other upstream 35825 10800716 ~ 10803288 (-) True G11105
TU16716 other upstream 570840 11335731 ~ 11339597 (-) False trnau1apb
XR_006253162.1 other upstream 617215 11382106 ~ 11405700 (-) False kcnn1a

Expression Profile