RNA id: TU16514


Basic Information

Item Value
RNA id TU16514
length 2599
lncRNA type intronic
GC content 0.35
exon number 2
gene id G11115
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10916071 ~ 10918689 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTAGAGGCTTTGAAGCTGTTGGGTGGAGCTGCATGTTGTAGTTGCTATGGGGGATGTTAATATTTCCTCGAGGACCAGTGGAATAGGTCATGCGATTACAATAAAATCAGTAAGCCCCAAATGACAGCATACTATCATCATAATACACAGTCATCTCTTTGCTGTAGCTTTGTGTTTAGACTGAGGTATGATGTTGCTCGGTTGAAGCAAATATTCATTATATGAAACCAAagtattaaattcaaataagTCACTCCAAACATCAGTAAGGTTATCGTGAaagccaaaataataataaaataataattaaaaaaacgtaaatgaaaatgagacatTTGCCCTTAATATGTAATACGTACATATTAAAACACGCTCAgattgaaaacataaaaatataaaaagcatcaACGTTAACTTTATTTGAAAGACATAAGAACAAATACGTCTGCCCTATGCGTCTTGACATGAGCACTTCTCCCCCGAATATCCAGTGAGCATCTCATAGAAGTGACACTGTGCTTTCTATTGCAAATGTCAGGCATATGCTTACTCCTTACATGTCAATCGTTATGATGACAAGGGGGTTTTCAAGGTATGCATAAGCAGTTCTTTCCAGCTGAACGTGGTTTCCCACGAGAACAGCAAAGTCTGTGGCTTTTCAGGTTTCAGAAATAACATGACATACAGTCATATATCTGTCAGTGAATCGTGTTTCCTTTTTCGCTGTACAGCATTGCTAAAAAGTTGTGTAaagcaatataataaaagaCCAATAGACTAGTTATCTATTAAACTGCCGTATGCCACCTGCTGTGCCCTGAATGCAGATCCAAGCAAAACTATCTACACATAGACTATTAGAATACATTTAGAACAAACATTAAACACAGGATAATATATGTTTATGGTTGTGCATATATGTGCATGAATCCAGTCGTTGGagcttgaatcagttcattcaacatcatgaatttatttcagtcctaatatttaaaagcattcaaCATACAAGCATATATACCTTCTGTTATGACTAGACTGATTCTGACCGTATCAAATTATGTATCAGAATatcaaaaatagtcaaatattGCATGGAATTGTTCTGCCTACGTTACGTGTCAGTCATGTGTATTGTACTGTGTGGTATGATATTCCCATAAAGCCACATTTATAGGATTACACACATGCTACATACATATTGTTAAAGTTCTTAATTGCAGCATTCTAAAAAAATCATCAAGCGTTAATATTCTCCTTCACTTTACCATACAAGCTTATCTCCAGGCTTCTCTTCATGCTCGCTGGCTTCCACTTGTTTACATGAAATCCAgtataattgtgtttttaaatgaacagtaaaTGCAGCTTACTCAGGAAGGTTAACTACAAAACAAGGCCCAAGCAACTCTACAGGTAGTGATGAACGTCCACTTTAGCCAGGACATTGTAGAGCCTTCATCTCTAGTTCTTCATCATTCTAATTTCTGTTAGAGAAGAAAACAAGTTTAAGTGTACATGctacatacatgtaaatatatttatatattatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagactgtatatatatataataaggcCATATCGTTACTTTTAGACtggggctttttttttcatttcattctgcaCATTGTTAAAGTTGCAAGAGAATAAGGGTCTGTGGATCCCTAATTCTCATGCTAACCACACAACTCTTATTTGTGAGGCAGTCATGTGACCATTAGATATCCATTACACCTGAACAATATCTCACTGTGCATTCATCAGCTTGTCATGCATGTGTTCTCTGTTACTCAGCACAGAGGAAGTAGTGTGTATGGAGAAGAGAGAAGTGGGGGAGAGAATTAAAGACAGAGGTAAGAGCAACGTGTACGtgtcattataaaaatacatatgtgaggcaaaacaaaacaaaacaaaacagaaaacatgcagCAGAAGTGAAAACAGTCTTAACATTACTAATTTGTCTTGTAGTAAGAGGAGAGTCAGAAGATCTTTCAAAAGCAATTAGTGAGGAGATATATAATTGCCTAATCTGTTGACATCAGTTTTACTTGTTAGTATTGATTGAGCTAATTTACATCCGGACTTCAGTCTGATTTACTGACAGCTCATGACCACGGTTTGCAGAAGATTGCAACACACTTGACCTAGTCTGCTCTGTTTTTGaagggtttttgtttgttgtggttTTCACAGCTCATAGTATGAATCTATTTAATTAATCAGATCTGAGGTGAATAACATTATTTCATCGTCATTTCAAACAAACGGAAAACTGCTCATTTGTGCTGTAGCTCGGCTAAAAACAGTATCACTATAAGCACTAAAAGCAAAAAGCTGCACGTTTGAGGTAAACAATAATATTGCATTCTCCAGTCATCTGGGGCCTGTTTCAGAAAGGAGGTTAAGTAAAAACTCTTGAGTAGGTTAACCCTGAAATGAGGGAAACTGAAatcttgtgttatttttaataataattttattaattcattaaataaattaaatgtttttacattttagtggtAAAACATTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16507 lncRNA downstream 13528 10897549 ~ 10902543 (-) False LOC122359462
TU16491 lncRNA downstream 32767 10803487 ~ 10883304 (-) True G11104
TU16497 lncRNA downstream 41894 10873432 ~ 10874177 (-) False G11104
TU16483 lncRNA downstream 86782 10757190 ~ 10829289 (-) False G11101
TU16484 lncRNA downstream 86782 10757190 ~ 10829289 (-) True G11101
TU16517 lncRNA upstream 34238 10952927 ~ 10978280 (-) True G11118
XR_006252710.1 lncRNA upstream 182833 11101522 ~ 11104592 (-) True LOC122359508
TU16650 lncRNA upstream 182852 11101541 ~ 11104592 (-) False LOC122359508
XR_006252712.1 lncRNA upstream 198308 11116997 ~ 11120787 (-) True LOC122359521
TU16666 lncRNA upstream 228559 11147248 ~ 11150504 (-) True G11234
XM_043259774.1 mRNA downstream 13446 10897554 ~ 10902625 (-) True LOC122359462
XM_043259791.1 mRNA downstream 26798 10864071 ~ 10889273 (-) True col15a1b
XM_043259526.1 mRNA downstream 54476 10831110 ~ 10861595 (-) True LOC122359216
XM_043259254.1 mRNA downstream 189225 10710965 ~ 10726846 (-) True xirp1
XM_043259352.1 mRNA downstream 231416 10669470 ~ 10684655 (-) False cdyl
XM_043259645.1 mRNA upstream 236573 11155262 ~ 11159313 (-) True LOC122359349
XM_043261904.1 mRNA upstream 287755 11206444 ~ 11227249 (-) False slc12a7a
XM_043261896.1 mRNA upstream 287755 11206444 ~ 11227248 (-) True slc12a7a
XM_043261925.1 mRNA upstream 287755 11206444 ~ 11227247 (-) False slc12a7a
XM_043261914.1 mRNA upstream 287755 11206444 ~ 11227246 (-) False slc12a7a
TU16480 other downstream 54517 10767974 ~ 10861554 (-) False LOC122359216
TU16500 other downstream 112783 10800716 ~ 10803288 (-) True G11105
TU16478 other downstream 132120 10769515 ~ 10783951 (-) False LOC122359216
TU16485 other downstream 151180 10758028 ~ 10764891 (-) True G11102
unassigned_transcript_206 other downstream 526448 10389551 ~ 10389623 (-) True trnak-cuu_1
TU16716 other upstream 417042 11335731 ~ 11339597 (-) False trnau1apb
XR_006253162.1 other upstream 463417 11382106 ~ 11405700 (-) False kcnn1a
XR_006253161.1 other upstream 463417 11382106 ~ 11405697 (-) False kcnn1a
TU16731 other upstream 523729 11442418 ~ 11445113 (-) False cnn2
TU16759 other upstream 530069 11448758 ~ 11449423 (-) False crsp7

Expression Profile