RNA id: TU16555


Basic Information

Item Value
RNA id TU16555
length 472
RNA type TUCP
GC content 0.53
exon number 2
gene id kcnh2a
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11229760 ~ 11264234 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGTGCCATGCACCGCAAAGCCAGCTTGCAGAATGCGACTTCTGACACAGATCTCATTCGGCTCCGGACCGCAGCTCAGGGCCCCCGAATATCACACACCTTAATAGATATGAAGTCAGACCCCTTAATCGCTGTTCCACCGGGTGAGATTGACATCATCGCCCCCTGCAAACTAATAGATCGGACCCACAACGTGACAGAGAAAGTCACACAGGTGCTGTCTCTGGGTGCAGATGTCCTTCCTGAGTATAAGCTCCAGGCTCCCCGAATCCACAAATGGACCATTTTACACTACAGCCCCTTTAAAGCAGTCTGGGACTGGGTCATCTTGCTGCTTGTCATCTATACGGCCATCTTTACACCTTATTCGGCTGCGTTCCTGCTCAGCGATGAGGAAGAGGCCGCCATGCAGCGCTGCGGTTACTCCTGCAGTCCACTCAACGTGGTGGACCTCATTGTGGATATCATGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16539 lncRNA upstream 28551 11209001 ~ 11211575 (+) True G11137
TU16540 lncRNA upstream 34088 11205743 ~ 11206038 (+) True G11138
TU16535 lncRNA upstream 82785 11156538 ~ 11157341 (+) True G11133
TU16526 lncRNA upstream 107137 11131574 ~ 11132989 (+) False LOC122359491
TU16523 lncRNA upstream 117012 11119887 ~ 11123114 (+) False LOC122359491
TU16563 lncRNA downstream 46914 11303678 ~ 11338469 (+) False fitm1l
TU16575 lncRNA downstream 48153 11304917 ~ 11321347 (+) True G11162
TU16583 lncRNA downstream 87007 11343771 ~ 11392670 (+) True G11170
TU16559 lncRNA downstream 97102 11353866 ~ 11355216 (+) True G11152
TU16594 lncRNA downstream 151868 11408632 ~ 11409086 (+) True G11177
XM_043262654.1 mRNA upstream 101298 11137101 ~ 11138828 (+) True LOC122361723
XM_043259814.1 mRNA upstream 104135 11119854 ~ 11135991 (+) True LOC122359491
XM_043259653.1 mRNA upstream 322388 10908283 ~ 10917738 (+) True LOC122359360
XM_043259730.1 mRNA upstream 487316 10748820 ~ 10752810 (+) True si:dkey-24c2.9
XM_043259549.1 mRNA upstream 491785 10742485 ~ 10748341 (+) True gorasp1a
XM_043261468.1 mRNA downstream 8527 11265291 ~ 11300035 (+) False map4l
XM_043261476.1 mRNA downstream 8527 11265291 ~ 11300035 (+) False map4l
XM_043261450.1 mRNA downstream 8528 11265292 ~ 11300035 (+) True map4l
XM_043261459.1 mRNA downstream 8528 11265292 ~ 11300035 (+) False map4l
XM_043261484.1 mRNA downstream 8528 11265292 ~ 11300035 (+) False map4l
TU16308 other upstream 521932 10711130 ~ 10718194 (+) True G10979
XR_006247735.1 other upstream 1323265 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 1324635 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 1488914 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 2068211 9162611 ~ 9171915 (+) False olfm3b
TU16565 other downstream 83099 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 239596 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 239596 11496360 ~ 11498937 (+) False mast3a
TU16617 other downstream 245638 11502402 ~ 11505730 (+) False mast3a
XR_006252734.1 other downstream 651309 11908073 ~ 11937590 (+) False pld1a

Expression Profile