RNA id: TU16559


Basic Information

Item Value
RNA id TU16559
length 1230
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G11152
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11353866 ~ 11355216 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTACTTCGGCTCCACCCGTTGGTGTTCTTGTCCCTGCAAGAGTTGCTCCAGGTGTGTTAGACCCGAGTGATCCAAGACCTCCTATCGCTGGTTTTCCCATCCCTACTCCACTTGATCCTGCACTGCTGAATGGTCCACTTTGTCCGATCGCAGAAGGGCTTGATCCAACGCCGCCAAATCCTGCCAACCCCGGTCCTACTCCACCCAAACTACTTGTCCCAGTCTGGGCTAAACCTGTTCTAGTTGATCCACCTAATCCTGTGCTGCCCGGTACACCTGAAAGGCTCCCTGTCCCCCCTACAGCTGTATTTAATGATCCTGTCATACCTGTTCCTGTGTTGCCCCATCTTGTGCTTGATCCTACACCATTAGAGTTCGGAAATGCTGATCCAGTGGAGCCAGCCCCGGTCCATGGCACGTTTGGTTTGCTTAGACCTGTTGAACTCATACCGGTCCCACCAGTATTTGGTACGTTTGGCAAACCAAAGGGGTTTGGCATGAATGGGTTAGTTCGAACTGTcggctCAGTTGGCAAGTGTAGTATTGAGATGCTCAACTGTGCTTTTGAgcgttttaatttcattttctctcaAAGAGATGAGCTCGCCTTTTAGTTTGTTATCATCTTTTAGTTTTCTGTTCTCCAGCAGAAGTTTTTCACTGTCTTGGTCGTTCTTGAGCTGAAGTTGATCAAGAGTTTTGCGATGCTCGCGAATCATGACACTGCGATTCTGATTGCACCACGTAGCGTCCTCTTTCAGACGTATGTTGTCTATCGTATATTTGGCATTTTCCCCATGAATTCTTGTGACCTGGTTCCCCACTACGTTCAGATAGGATTGGAGCTTGTTTTCGACTTCTCTTGAAAGACTGCTACAGTTTTCCCGAATGTCTTCGAGCTGACTTTTTTGTTTATCGCACGTTAGCTGGAAAGAAATATGTTTTGCGAAAAAATCATCGATCCTTTTAAGGAATTCTTTGGTGACGTTAGGGATTTCTTGTAAAGAAGCGCCAAAATCCTCTTTGCACTTCTTTTGGTACAAGGCAAGCTCCTCTTCAAGGAAAGCCTTGTCTCGCCTTAGATGAATTGTTTCCAAGTGATACCCATCCTTGTCTTTGTTGGAATTGTCCAGCTCAGTTTTTGCATTGTTCACCATCTGAGTAAAGTTTGCTTTAACCAGCTTTAGCATATCCTCTGACTGCTGGAGCATACTTTGCAAGCGTCTGTt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16563 lncRNA upstream 15397 11303678 ~ 11338469 (+) False fitm1l
TU16575 lncRNA upstream 32519 11304917 ~ 11321347 (+) True G11162
TU16539 lncRNA upstream 142291 11209001 ~ 11211575 (+) True G11137
TU16540 lncRNA upstream 147828 11205743 ~ 11206038 (+) True G11138
TU16535 lncRNA upstream 196525 11156538 ~ 11157341 (+) True G11133
TU16594 lncRNA downstream 53416 11408632 ~ 11409086 (+) True G11177
TU16595 lncRNA downstream 66943 11422159 ~ 11423589 (+) False rps28
TU16596 lncRNA downstream 66943 11422159 ~ 11444571 (+) True rps28
TU16597 lncRNA downstream 91296 11446512 ~ 11448561 (+) True G11179
TU16604 lncRNA downstream 93547 11448763 ~ 11449433 (+) True G11186
XM_043219439.1 mRNA upstream 12763 11339735 ~ 11341103 (+) True mrpl34
XM_043219425.1 mRNA upstream 17882 11331383 ~ 11335984 (+) True fitm1l
XM_043261450.1 mRNA upstream 53831 11265292 ~ 11300035 (+) True map4l
XM_043258084.1 mRNA downstream 5123 11360339 ~ 11367651 (+) True nr2f6a
XM_043258074.1 mRNA downstream 5133 11360349 ~ 11367651 (+) False nr2f6a
XM_043258093.1 mRNA downstream 5133 11360349 ~ 11367651 (+) False nr2f6a
XM_043256208.1 mRNA downstream 66874 11422090 ~ 11423303 (+) False rps28
XM_043256200.1 mRNA downstream 66874 11422090 ~ 11423303 (+) False rps28
TU16565 other upstream 12755 11339863 ~ 11341111 (+) False mrpl34
TU16555 other upstream 97102 11240126 ~ 11256764 (+) False kcnh2a
TU16308 other upstream 635672 10711130 ~ 10718194 (+) True G10979
XR_006247735.1 other upstream 1437005 9911628 ~ 9916861 (+) True znf414
TU16613 other downstream 141144 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 141144 11496360 ~ 11498937 (+) False mast3a
TU16617 other downstream 147186 11502402 ~ 11505730 (+) False mast3a
XR_006252734.1 other downstream 552857 11908073 ~ 11937590 (+) False pld1a
XR_006247874.1 other downstream 924695 12279911 ~ 12280014 (+) True LOC122328992

Expression Profile